Gene Tpen_1739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1739 
Symbol 
ID4601764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand
Start bp1682249 
End bp1682863 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content65% 
IMG OID639774512 
Productcobalamin (vitamin B12) biosynthesis CbiM protein 
Protein accessionYP_921137 
Protein GI119720642 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0310] ABC-type Co2+ transport system, permease component 
TIGRFAM ID[TIGR00123] cobalamin biosynthesis protein CbiM 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.749284 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATATAC CAGACGGGTA CCTCGACCCG GCGATGTGCG CAGTCACCTA CGCGCTCTCC 
CTGGCGGTCC TGGCGTTCTC CGCGTTGAAG GCTAGGAGCG CGGGCTCCGA GCAGAAGACC
CTTGTCCCCG TCCTCGCCGC CGCTATCTTC GCGGCCCAGA TGCTGAACTG GCCTATACCC
GGCGGGACCT CGCTGCACCT GGTCGGCGGG GCTCTCGCCT CGATACTGGT TGGCCCCTGG
CTCGCTAGCC TCACTATGTT CCTCGTGCTC TTGACGCAGG CTCTAGTCTT CCACGACGGC
GGTATAACGA CTCTCGGCGC CAACGTCTTA AACATGGGGA TAGTGGCGGT GTTCGCCGGG
TACCTCGCGT ACAGGGCTTT CCCGGAGCGC CTCCGCGTGG TCGGAGCCTT CCTGGCTGGG
TGGCTCAGCA TAACCCTGGC GGGCGTTGTG TGCGGCGTGG AGCTGGGGCT CTCGAAGCAG
TTCCTCTACG GGCTCTCGGT CACGGTGCCG GTGATGGGGG GCTGGCACGC GCTCCTCGGG
GTGGTGGAGG GCTTGATCAC GGCTTCCGTC TACGCCTACC TGAAGTCTAA GGCTCCCCAG
CTCGTAGCGG GGTGA
 
Protein sequence
MHIPDGYLDP AMCAVTYALS LAVLAFSALK ARSAGSEQKT LVPVLAAAIF AAQMLNWPIP 
GGTSLHLVGG ALASILVGPW LASLTMFLVL LTQALVFHDG GITTLGANVL NMGIVAVFAG
YLAYRAFPER LRVVGAFLAG WLSITLAGVV CGVELGLSKQ FLYGLSVTVP VMGGWHALLG
VVEGLITASV YAYLKSKAPQ LVAG