| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1712 |
|---|
| Symbol | |
|---|
| ID | 4601737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1649135 |
|---|
| End bp | 1649707 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639774485 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_921110 |
|---|
| Protein GI | 119720615 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGGGTGT GTCTGGTGCC GTTTAAGTCG TTTAGGAGGC TTGAGATTCC GGACGTGGTG
CTCGTCGAGT ACGCGGTTTT CCCCGATGAG AGGGGTTTCT TCGCGGAGCT GTACAAGAGG
ACTGAGTTCC TCTCGGGGGG TGTGCCGTAC GGCTTTGTCC AGGTGAATCT TAGCTTTTCG
AGGGCTGGGG TTGTTAGGGC TCTTCACTAC CAGCTTAAGC CGATGGAGCA GGGGAAGCTT
GTGTACGTGG TGAGTGGTAG GGTTTTCGAC GTGGCGGTGG ATATTAGGAG GGGGTCGCCG
TGGTTTGGGA GGCATGTGTC TGTGGTGTTG GAGCCGGGCT TCGCGCTTTG GGTTCCTCCG
GGCTTTGCTC ACGGTTTTCA GGCTTTGGAG GATTCTTTCT TCCTCTACTT CGTGACGAAG
GAGTATAGTC CTCAGCACGA GAGGTGTATT TTCTGGAGGG ATCCTGATCT CGGGATTAGG
TGGCCGAGGG TGGAGGGGGC TGTGGTGAGT GGTAGGGATT CGAGGTGCCC GTTGTTCAGG
GAGGCTGAGA CGAACTTCGA GTACCCGCTG TAG
|
|---|
| Protein sequence | MGVCLVPFKS FRRLEIPDVV LVEYAVFPDE RGFFAELYKR TEFLSGGVPY GFVQVNLSFS
RAGVVRALHY QLKPMEQGKL VYVVSGRVFD VAVDIRRGSP WFGRHVSVVL EPGFALWVPP
GFAHGFQALE DSFFLYFVTK EYSPQHERCI FWRDPDLGIR WPRVEGAVVS GRDSRCPLFR
EAETNFEYPL
|
|---|
| |