Gene Tpen_1291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1291 
Symbol 
ID4600599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand+ 
Start bp1234231 
End bp1234899 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content70% 
IMG OID639774067 
Producthypothetical protein 
Protein accessionYP_920692 
Protein GI119720197 
COG category[L] Replication, recombination and repair 
COG ID[COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.296488 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTGATAA GGTTCAGGCT TAGGCTTAGG GCCGTCTCCC TGCTGACGGT CGGCTGGGGC 
ATACCGGACG TCCTGGGGGC GGACATAGTG ACGGCGAGGA AGGTCAAGGC GGACGGCACC 
TACGAGTACT ACGTGCCCGG GAGCACGGTG AAGGGCGTGC TGAGGAGCGC GGCGAGCAGG 
GTGGCGGGCG CCTACGGCTT CACGAGCTGC GGCGAGGTGG ACCCGGAGAA GGTGAGGAAG 
GCCCACGAGG CCATGGGAGG CCCCTGCGAC GTCTGCACGC TGTTCGGCTA CCCCTACCCG 
AGCGTGGAGG GGGCGTCGAA GGTCTACGTC AGCGACTTCT CGCCCGTCGG GAGGCCGGCC 
CCGGTCATAG TGGCGAGGAC GGCGCTCAGG GACGACACCC AGACCGTGCG CGAGGGGAGC 
CTGAGGAGCG TCGAGCACCT GCTACCCGGC TCCGAGTTCG TGGGGGAGGT CAGGGTGGAC 
GGGGCGGCCT CCCGCCTGGT CCCCCTGCTC CTCCTCGCGG TGGCTGAGCT AAGGACGAGC 
AGGGTGGGCA GGGGCTCGCT CGTCGACGCG AGGGTCGAGG ACGGCGGCGC GCTGGACGCG 
GTCGTGGCGC CCGAGTGGAG GGGGTTGCTG GAGGGCGTTA GGTCCTGGCT CTGGGAGGGG 
GTGGTCTGA
 
Protein sequence
MVIRFRLRLR AVSLLTVGWG IPDVLGADIV TARKVKADGT YEYYVPGSTV KGVLRSAASR 
VAGAYGFTSC GEVDPEKVRK AHEAMGGPCD VCTLFGYPYP SVEGASKVYV SDFSPVGRPA 
PVIVARTALR DDTQTVREGS LRSVEHLLPG SEFVGEVRVD GAASRLVPLL LLAVAELRTS 
RVGRGSLVDA RVEDGGALDA VVAPEWRGLL EGVRSWLWEG VV