| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1290 |
|---|
| Symbol | |
|---|
| ID | 4600598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 1231493 |
|---|
| End bp | 1234237 |
|---|
| Gene Length | 2745 bp |
|---|
| Protein Length | 914 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639774066 |
|---|
| Product | metal dependent phosphohydrolase |
|---|
| Protein accession | YP_920691 |
|---|
| Protein GI | 119720196 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR02578] CRISPR-associated protein, Csm1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.726249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTCT CGCTGGAGCT TAGGGAGCCG TACCCCGTGT ACAGGGCGTT CAGGGTCCCC
GTCTGGGGGA GGTGCGGCCC GGTCAGCGTG AGGAGGGTCG AGCCGGGCGA CGTGAAGGCC
CTGGAGTGGT TCATCGGGGC GGCCAGGAGG CTGGCGGAGA GGCTCGCCGC GGAGGCCCGG
GACGACTACG AGAAGCTGGA AGTCGTCGCG AACGTCGCCG CCGTGCTCCT CAAGGCCCCT
CTCTCGCGGG AGCTCTCGCC CGTGCACCCG AGCCCTATGA AAGCCCAGGT GGCGCTCCTA
GCCCTCCCCG ACGCCCTCTT CAAGAGGTAC TTCGGGCTGG TGAAGGGCGA CGTCTACTCG
ATGCTCCGCG ACGTCCTCGG GCTCGACCTG GGGGCCATGG GGCTCGGCGA GGTCTTCGGG
CGCGAGGCCT ACGAGAACGT GTACAGGCTG TGGGTAGCGT TCCCGGCTGA CACGAGGCCC
GGGTACAACA CGTCGAGCCT AGCCGCCCAC CTGCTCATGA CCTCCGCTCT GGCGTGGGCC
CTGGCCTACG AGTCCGGGAA GACGGAGGAG GAGAGGCGCA GGGAGGCCGC GGTCGCCAGG
GTTGCCGCCC TCCTCCACGA CATAGGCAAG GCGGTGGACC CGGAGAGGCA CGCCGAGGAG
TCTGCCAGGA TAGCCGAGTA CCTCCTCAAG GGGATAGTGG GCGACGAGGT CCTCGCCAGG
GTGGTGGGGG AGGTCAGGGA GCACCACGCC CGCGAGGGCT ACGTGAGCAG GGCCGACAGG
CTGGCGTCGG CCGCGGACAG GCTCGCCAAG GTCGTCGACA GGGCTATAGG GGACAGGGTC
TCCAGGATGG AGGGGCTGGT GGGCGGGAGG AGGGACGACT GGGGCTTCTG GAGGAGGCTC
TACGAGAGGC TCGACGACCT CAAGAGGGAG GGGCTCGCCA GGGAGGACCC CGTCAAGGAG
CTGACTGAGC TCTTCCTGGA GAGAGCGGAG GAAGCCGCCG AGAATGTGAG GAAGGAGGAG
AAGGAGGAGG GTGTGAAGGG CTTAACGCTA CTCCTCTTCG ACGTTGGCTC CATACAGGAG
TTCGTCTACA GGAGCATGGA GCTCAGGGTT GTAGCCGCGG CGAGCCTCCT AGTGGACTTC
GTGACGTACT CCTACCTGCC GCTCTACCTG AGGGCTAACG GCGTGCGCGT ACCGCCGGAG
GCATTCCTCT ACTCCGGGGG CGGTATCCTC CTCATGTTGC TACCGGAGTC GCTCGCCGAG
AGAGTCTGGG AGCTCGCCCG GAAGGTCAAA GAGGAGTTGC CGGAGCCGCT GAGGCTGGTG
GTAGCGGATG CGGAGTTCCA CGTGGACTTC AAGACAGCCT GGGAGAAGAT CGAGGAGGCC
CTGCTGATCG CCAAGCTCGG CGTAGAGCTG GCGGACGAGC CGCAGTTCGA CCCGCAGAAC
GGCAGGGAGC TCTGCAGGCT CTGCCTGAGG GAGTGGGCCT CAACGAGTGT TCGCACGCCC
GAAGGCGAGG TACCCGCGTG CCAGACATGC AGCAGGCTCT ACGATCTGGG CTCCGAGGTC
CACTTCCGCA AGAAGTGGGA GTCGAGGGTC GAGGTGGGAG GCCGCTCCTT CACCCCGAGC
GAGGCCTTCG ATGCGGTGTG GAATGATGTG TCGAAGTTCG TGGTAGAGGT TATCGCGGGC
CACGACCCGA GGGAGGCGGC TAAGCCCAAG CGCCTCAGGG ACTGCGCGGT GATCAAGTTC
GACGGGAACG CGATGGGAGC GTTCATGTCG AAGGCCCTGT CCTTCACGGA CGCCATCGAG
AGGAGCTTCA GGGTGGACAT GGCCTTGAAG AACGCCTACC TCAAGGCCCT CGAAGCCCTC
TACGAGGGGG TCAGGAGGGT CGCGGGCGAC GGGGCGGCGG AAGCCGAGGT GGCGAGGGTG
TTCCTGGGGA CGCTGTACAT GGGAGGGGAC GACGGCGTCC TGATAGCTCC TGCGTGGGCG
GCGCCCCTCC TAGCCCACTT CATAGCGGAG GAGTTCTCGA GGCAGCTCGG GCTGGTCGCG
ACGCTCACGG CCTCCGTCGC CGCGGGGCCC GCCAGGATGA GCGTGTGGTC TCTCGTCGAC
TGCGCGTCGG CGGAGATGGA GGAGGCGAAG CTCGCCGCTA CGAGGCACAG GTGCGGCGCG
TTAGTCTTCG ACGTGTTCGA CTCCGGCTCG CCGTCCGGGG CGACAGCCAG GGAGAGGCTG
AAGAGGTACT CGCGGAAGCT TGGCGAGAAG TCGAGGGACC AGCTCATAGA CGGCTACCAG
CCCTACCTCA TCGAGAGGAA GGCTCTCAGC GGGGAGGGAG TCCCGGAGGC GTGGGCCAGG
CTGTTCAGCC ACGTCCTCGG GGTTCCGGCG CGGGGCGCCT GGTGCGAGGA CTCCTCGTTC
AAAGCCCACG CGGAGGCTTT CGGGAAAGCT TACCTGGCTT CGAGGGCGGA GGGCGAGGAC
GAGGAGGTCG AGAGGGCTAG GAAGAGGCTG GCGGCGCTGA GGAGGGTCGC CCTGGACACG
TGGAGGGAGG TCTCGGGCTC CGCGTACTGG AGGGAGCAGG CGTACATATA CGTGCTCAGG
CAGCTGGAGT CCGAGGCCCT CGGCGAGGAG ACAAGCGAGG CGTACGGCGC GCTCAAGCGC
TTCATCGAGT CGAACCTGTT CGACGAGTCT GGGAACGCGT CGGGCTACGT GCCCCTGGTC
GACCTCCTCA CGTTCATAAA GCTGGTTAAG GGTGGTGCGT GGTGA
|
|---|
| Protein sequence | MSLSLELREP YPVYRAFRVP VWGRCGPVSV RRVEPGDVKA LEWFIGAARR LAERLAAEAR
DDYEKLEVVA NVAAVLLKAP LSRELSPVHP SPMKAQVALL ALPDALFKRY FGLVKGDVYS
MLRDVLGLDL GAMGLGEVFG REAYENVYRL WVAFPADTRP GYNTSSLAAH LLMTSALAWA
LAYESGKTEE ERRREAAVAR VAALLHDIGK AVDPERHAEE SARIAEYLLK GIVGDEVLAR
VVGEVREHHA REGYVSRADR LASAADRLAK VVDRAIGDRV SRMEGLVGGR RDDWGFWRRL
YERLDDLKRE GLAREDPVKE LTELFLERAE EAAENVRKEE KEEGVKGLTL LLFDVGSIQE
FVYRSMELRV VAAASLLVDF VTYSYLPLYL RANGVRVPPE AFLYSGGGIL LMLLPESLAE
RVWELARKVK EELPEPLRLV VADAEFHVDF KTAWEKIEEA LLIAKLGVEL ADEPQFDPQN
GRELCRLCLR EWASTSVRTP EGEVPACQTC SRLYDLGSEV HFRKKWESRV EVGGRSFTPS
EAFDAVWNDV SKFVVEVIAG HDPREAAKPK RLRDCAVIKF DGNAMGAFMS KALSFTDAIE
RSFRVDMALK NAYLKALEAL YEGVRRVAGD GAAEAEVARV FLGTLYMGGD DGVLIAPAWA
APLLAHFIAE EFSRQLGLVA TLTASVAAGP ARMSVWSLVD CASAEMEEAK LAATRHRCGA
LVFDVFDSGS PSGATARERL KRYSRKLGEK SRDQLIDGYQ PYLIERKALS GEGVPEAWAR
LFSHVLGVPA RGAWCEDSSF KAHAEAFGKA YLASRAEGED EEVERARKRL AALRRVALDT
WREVSGSAYW REQAYIYVLR QLESEALGEE TSEAYGALKR FIESNLFDES GNASGYVPLV
DLLTFIKLVK GGAW
|
|---|
| |