Gene Tpen_1269 details

Gene Information

• Locus tag: Tpen_1269
• ID: 4600484
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 1206045
• End bp: 1209386
• Gene Length: 3342 bp
• Protein Length: 1113 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 639774045
• Product: glycoside hydrolase family protein
• Protein accession: YP_920670
• Protein GI: 119720175

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.172811
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTTGG GGACCGTGCG CCTCGCTGCT GCTACGGCCC TCCTGCTAGC CCTACTCCTA 
CTCGCCGCCG CCCGCGGCGA ACCCGTGACT GTGGACGGCT CAGGCTTCGA CTGGCCGTAC 
GACTCCTGCC ACGCGCTCGA CCCCCACGGC GACCTCCTCG ACGCGACCCC CCACTGGTAC 
GACAGCAGGG ACCTCCTAGC CTGGTACTAC GCTGTCGGCG ACCAGTACGT CTTCATCAGG 
CTAGACCTCC TGGACCTAGC CTACGGCGCC GAGACGGCGA GCTACCCGGA CGGCGGTGTC 
GCGGACGCCC TAAACATCTA CGTGATGCTC GGGTGGGAGA ACGCGCCGGG GTACCAAGAG 
TGGGCCCCCG ACTACCTGCA GCTGAACGGC TACGGAGTCC ACATAAGCGA CTACCGCTGG 
GTCGTAGCTA TCGCGGTGTA CGACTCCGCA CACTACAAGG TGTACAGGTA CGACTGGTCT 
GTCCTCGCCG AGAACAGCGG GCTACAGGTA GCCTTCAACA GCCAGTGGGA CCTCGTCGAG 
ATCGGCATAC CCAGGAGCAT GCTGGAGAGC TACGGCTGGA CGCCTACATC CAGGGTGTGG 
GCCAAGATTG CAACCGCGCT CGTGAAGACG GGCGGCGCGA ACGTCCTGGC GGACGCCATG 
CCGAACACGG TCAGCTTCGA CGGGAACGCC GGCCGCTACG AGTGGAGCGG CGCCGTGTTC 
AGCGACCAGA AGTGCGGGAC CGCCAAGGTA GCCTTCGTGC ACCACGGGAA CCAGCACCTC 
GCGGACAACA GAGCCCTCAA CAAGCCTAAC GCCGTCAACA GCTACGACTA CATACTGAGG 
GTGCACGAAG AGCTCTCCGC GAAGGCAGGC AGGAGGATAC CCGTGTGCGT CCACATGTCG 
GGAACCCTGG CGGCGAGCTA CGTGTGGTGG GACCCGAGCA TAGTGGCGCA CCTGAGGAGC 
CTCGCCGCGA AGGGGCTAGC GTGCATAGTC GGGGGAACCT GGGCTGAGTA CATCACGGCG 
TACTTCTACG ACAACTTCAA CGACCCCTCG TTCTACCTCG GAAAGCTCTA CGCCGAGGCA 
CTGTTCGGCT ACACCCCGCT CACCGCGTGG ATACCCGAGA GGACGTGGGA CGACGAGAGA 
ACCGGTATCG CGTACACAGT CAGCAAGCAC TACTACGCGG TGATACTCGA CGGCAACACG 
CACCACGATG ACTGGAGCCC GAACACCAGC CCCTACAAGC CCCACCAGTA CGACCCGTCG 
AAGACGGGGG GCAGGGAGCT CTACGTCTTC TTCATCGACT GGGAGATGCA GCAACTCCTC 
CTCGCGAACA CGGACGGAGG GCTGAACATA AACCTGAGGA GGAAGCTCGC CTGGGCGGCC 
ACCAACGCGG ACCAGCAGAT GCTGTTCCTC TACGCGGACG ACTGGGAGAA GGCCGCCGGG 
ATATCCAGCC CGAGCTGGGA CCCCGGCAAC CCGTACCGCT ACAGGGACTC GCTGACCTGG 
ATAGCCATGC ACCCGTGGAT ACAGGTCGTA ACGGTGGACG AGGTCGTCGG CTGGCTTAGG 
AGCGGCTCGT GGACGCCGGT GAAGTACTAC TACTGCGGCT ACGACACCTA CTACTACCTC 
AAGACGTGGG TCCCGGGCTA CCCGTACGAC TACAGAAGGG CCTACGACGG GTGGTACTGG 
GGTACGAGCA GCGCGAAGAG TTTCGCCTGG TACGGTAGCG GCCAGCCGGG CTACTCGCTC 
CCCGACACCA CGATGCCATT CGGCGACGTC TTCGGGTACA CCACCTACAA CGGGTCGCCC 
GCAAACACCG TGATATACAG GCTGCTGGCC CCGGGGAAGG CTCTGGACAG CGCGCCTAGA 
AACGAGCTGT GGAGGCTCGC GGTCATGGCG GCTAACGCGT TGCTCTACGA GACAGCCTGG 
CACGAGGGCT CCGACTGCGT CGGGTGGGGC CTCAACCAGT GGAACCACTT GAGGCTCGTG 
AACGTGCTCC TACTCGCGTC CAAGTGGCTC GACGACGCGC GCCTCGGGAA GATCGCGGGC 
GCCTCCTACC TAGTCGGGGA CTTCGACTGG GACGGCAGGC CCGAGGCGGT GATCTACAAC 
CGGGCGGTGT TCGCCTACAT AGACGACAAG GGAGGCGCGG CGCCCCTCAT CTTCGCCTAC 
AACAGGACCA CCGACAGGGT CTACGTGTCC GTGGGCGCCC CGCTCGTGTA CTGGGGCGTA 
CTGGGCGACG CCTGGTACGG CGACAACCAC GTGGGCTTCC TCGCGGACGA CTACTTCGAC 
GCCACGGGTA AGAACTACTA CTCGTCCAGC TACCAGCTGG TCTCGGCTTC GAGGAGCGAC 
GCCGAGGGGG GAGTCGTGGT CAAGCTCGCG GCTCCCGACA TGGACGGGGA CGGGCGCCCC 
GACTTCTACA AGTACTTCGT GCTCCGCGAC ACCGCCAACT ACGTCGACGC GGTCTACGAG 
CCCTCCGGGA AGGCTGGGAC CGTGTACTCC GCCGTCGGCC TCTCGGTAGA CCTGCTCGAC 
AGCCTCTTCA ACGGCGACAG GGCCGCCAGG GTCGGCGACC CCTCCGGGGC CTCGACGTTC 
GGCTACAGGA ACGGCTACAC GGGGGCCTAC GCGTACGTCA AGCCGTTGCA GGGCGCGTCG 
TGGACGGGGC CCCAGGACCT CTCCAAGTAC ACCCTCCAGT ACGTTGCGAA GCTAGCAGTC 
AGCGTGTCGC AGGGCCAGTC GAAGGTGCGC CTCTACCTGC CCGGCGACCC CGGCCAGTAC 
GCGCCCCGGT GCCAGCCCTC GGCCTACGCG ACTATCGGCT TCCTCAGGTC CCCCGGGTCG 
ACGGCGGTGC TCGTGGCTGT GTACGGCAAC TCCAGCGCAC CCGTGAACTC CTTCGAGGCT 
AGGGTTGTCG ACGCGTCCGG CGCGGGCTCC TGGAGGCTCG ACGCCAGGCT CGCCGGCGGC 
TCCCTCGGCT CCCCCTACGC CTCCTTCCTC TTGAACCTGA GCTCGTCCCA GCTCGCTCCC 
GGGATGTACT ACGTGGAGCT CAACGTGAGC CTGGGGGCCT CGAGGATCGT CGAGAGGGCG 
TACAGCGTCT ACGTGAGGAG GCTCGAACGC GGCTACAACC TGGTGTCCCT CCCGTTCTTC 
TACAGCGCCG TCGTGAGCCC CTCGAAGGCC TCCGAGCTCG CCGAGACCGC GGGCACCAGC 
CTGCTCGCCG TGTGGAGGTG GGACGTGCAG GCGCAGAGGT TCAGGGGCTA CGTACCCGGT 
GTGAGCGGGC CCGAGGACGA CTTCCCGCTG GAGCCCGGGA GCGGCTACTT CGTCTACGCG 
AAGTCTCCAG TCGTCGTGGT GTGGGTGGCC GGGAAATGCT GA 

 

Protein sequence

MSLGTVRLAA ATALLLALLL LAAARGEPVT VDGSGFDWPY DSCHALDPHG DLLDATPHWY 
DSRDLLAWYY AVGDQYVFIR LDLLDLAYGA ETASYPDGGV ADALNIYVML GWENAPGYQE 
WAPDYLQLNG YGVHISDYRW VVAIAVYDSA HYKVYRYDWS VLAENSGLQV AFNSQWDLVE 
IGIPRSMLES YGWTPTSRVW AKIATALVKT GGANVLADAM PNTVSFDGNA GRYEWSGAVF 
SDQKCGTAKV AFVHHGNQHL ADNRALNKPN AVNSYDYILR VHEELSAKAG RRIPVCVHMS 
GTLAASYVWW DPSIVAHLRS LAAKGLACIV GGTWAEYITA YFYDNFNDPS FYLGKLYAEA 
LFGYTPLTAW IPERTWDDER TGIAYTVSKH YYAVILDGNT HHDDWSPNTS PYKPHQYDPS 
KTGGRELYVF FIDWEMQQLL LANTDGGLNI NLRRKLAWAA TNADQQMLFL YADDWEKAAG 
ISSPSWDPGN PYRYRDSLTW IAMHPWIQVV TVDEVVGWLR SGSWTPVKYY YCGYDTYYYL 
KTWVPGYPYD YRRAYDGWYW GTSSAKSFAW YGSGQPGYSL PDTTMPFGDV FGYTTYNGSP 
ANTVIYRLLA PGKALDSAPR NELWRLAVMA ANALLYETAW HEGSDCVGWG LNQWNHLRLV 
NVLLLASKWL DDARLGKIAG ASYLVGDFDW DGRPEAVIYN RAVFAYIDDK GGAAPLIFAY 
NRTTDRVYVS VGAPLVYWGV LGDAWYGDNH VGFLADDYFD ATGKNYYSSS YQLVSASRSD 
AEGGVVVKLA APDMDGDGRP DFYKYFVLRD TANYVDAVYE PSGKAGTVYS AVGLSVDLLD 
SLFNGDRAAR VGDPSGASTF GYRNGYTGAY AYVKPLQGAS WTGPQDLSKY TLQYVAKLAV 
SVSQGQSKVR LYLPGDPGQY APRCQPSAYA TIGFLRSPGS TAVLVAVYGN SSAPVNSFEA 
RVVDASGAGS WRLDARLAGG SLGSPYASFL LNLSSSQLAP GMYYVELNVS LGASRIVERA 
YSVYVRRLER GYNLVSLPFF YSAVVSPSKA SELAETAGTS LLAVWRWDVQ AQRFRGYVPG 
VSGPEDDFPL EPGSGYFVYA KSPVVVVWVA GKC