| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1146 |
|---|
| Symbol | |
|---|
| ID | 4600952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1085761 |
|---|
| End bp | 1086462 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639773922 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_920547 |
|---|
| Protein GI | 119720052 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.479676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCAT TGGGAAATTG CGTGATTCTT ATAAGCTGTG GGGGGCTTTG TAGGCTGTGG
GGGCGCGCCT TGAAGGTCAG AGTCGTGTCT CTAGACCTCG ACGGAACCGT GGTTAGCAGG
GAGTACGTCG ACTACTTCTG GCTGGAGCTC GTGCCTAGGC TTTACGCGCG GAGGCACGGG
TTGAACCTCG AGGAGGCGAA GAGGCTGGTG TACTCTGCGT ACGACGAGGT GGGCCCGGGG
GACATGAGGT GGTACCAGCC GTCCTACTGG TTCAAGAGGT TCGGGATAGA GGAGTGGCTC
GGCGACGCCC TGAGGGAGGC TGGAAGGCTC GTGAGGGTCT ACGAGGACGC TAGGAGGTTC
CTCGAAAGCC TACCAGGCTC GCTCATAGCG GTGCTGAGCA CGAGCGCCTC CAGGGAGTTC
GTAGAGCTGG TCATGGAGAG GGAGCCCTTC CTGAGGGGGG TTTTCCGCAG GGTGTTCTCG
TCTTCCTCCG ACTACTCCCT GCCCGGGAAG CCCCCCGAGT TCTTCAGGAT AATACTGAGG
GAGCTGGGCG CCCGCCCCGA AGAGGTGGTA CACGTGGGCG ACGACCCGGT GCACGACTAC
GAGAACCCGC GGAAAGCCGG GCTGAGGGCC TACCTGCTCT CCAGGAGTGG CGGCGACGGG
ATAAGGGGGC TAGACGAGCT ACTCGCGGTA CTCGAAGCGT AG
|
|---|
| Protein sequence | MKALGNCVIL ISCGGLCRLW GRALKVRVVS LDLDGTVVSR EYVDYFWLEL VPRLYARRHG
LNLEEAKRLV YSAYDEVGPG DMRWYQPSYW FKRFGIEEWL GDALREAGRL VRVYEDARRF
LESLPGSLIA VLSTSASREF VELVMEREPF LRGVFRRVFS SSSDYSLPGK PPEFFRIILR
ELGARPEEVV HVGDDPVHDY ENPRKAGLRA YLLSRSGGDG IRGLDELLAV LEA
|
|---|
| |