Gene Tpen_1101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1101 
Symbol 
ID4600968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand
Start bp1039293 
End bp1039979 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content57% 
IMG OID639773878 
ProductHAD family hydrolase 
Protein accessionYP_920503 
Protein GI119720008 
COG category[R] General function prediction only 
COG ID[COG0561] Predicted hydrolases of the HAD superfamily 
TIGRFAM ID[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.744434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGCG AGTGGATCGT GGTGTCCGAC TACGACGGTA CGCTGGCCGA GGAGAACAGA 
GAGGTGGAGC CCCGCGTCTT GGAGAAGCTC GAAGAGCTCA AAGCAAAGTA CCCCTTCAAG
TTCGTTATAG CGACGGCGCG ACCCCTGGAG GACATATCGA GGTTCGTGGG TAAGCTCTGG
CTCGTAGACG CGCTCATACT GGAGGTGGGC TCAGTCGTAG CGTTGCCCGA AGCATTGGAG
GTTATATTCA AGCCGTGGGG GTGGGATAGG CTCCGGGCAG TACTCAGGGA AAGCGTACCG
GCTGTAAACG AGGGGAGAGT GCTGTACTAC GTCGACGAGG AGGAACTCCA GGTAGCGGAG
AGAGTTGCTA GGGAGAAGCT GGGAGCCTTC GGGTACGACC TCGCGAAGGT CGGCTCGCGG
ACGTATGCGT TCATGCCTAG GGGCATCGAT AAGGGTGTGG GTCTCGAGAG GCTTCTCAAG
CTGACTGGGT GGAGCGACGC CATGATAGTA AGCATCGGAG ATAGCCGCAC GGACCTACCG
CTCTTCCAAA AGTCGAAGGT CAAGGTGGCC GTTGGGAACG CCGCGCGAGA AGTCAAGGAG
AAAGCGGACA TAGTTTGCGA AGAGAAGTAC GGGGACTGCG TGGTAAGAGT AATCGAGGAG
ATAGTTAACC GTATGAGCTA TAGCTGA
 
Protein sequence
MSGEWIVVSD YDGTLAEENR EVEPRVLEKL EELKAKYPFK FVIATARPLE DISRFVGKLW 
LVDALILEVG SVVALPEALE VIFKPWGWDR LRAVLRESVP AVNEGRVLYY VDEEELQVAE
RVAREKLGAF GYDLAKVGSR TYAFMPRGID KGVGLERLLK LTGWSDAMIV SIGDSRTDLP
LFQKSKVKVA VGNAAREVKE KADIVCEEKY GDCVVRVIEE IVNRMSYS