| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0949 |
|---|
| Symbol | |
|---|
| ID | 4601289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 900868 |
|---|
| End bp | 902106 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639773727 |
|---|
| Product | SufS subfamily cysteine desulfurase |
|---|
| Protein accession | YP_920352 |
|---|
| Protein GI | 119719857 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.286124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTCGACC CCTACAGGGT TAGGAGGGAT TTCCCCATAC TCTCGAAGAA GGTTCACGGG
AAGCAGCTTG TCTACTTCGA TAACGCGGCT ACGAGCCAGA GGCCCCTCCA GGTGGTGGAG
GCTGTCGAGT CGTTTTACAA GTCGCTGAAC GCGAACATAG GTAGGAGTGT GCACGAGCTT
GGGCTCAGGG CTACCGAGGC TTACGAGGAT TCGAGGAAGA TTGTCGCGGC GTTTATAGGG
GCGAAGCCCG AGGAGCTCGT CTTCACGAAG AACACTACCG AGTCCATAAA CCTAGCCGCC
TACTCGTTGC TGGTGTCGGG GCTTATATCG AGGGGCGACG CCATAGTCGT TACGAGGATG
GAGCACCACA GCAACCTGTT GCCCTGGGTG CGGGTAGCGA AGCTCGCGGG GGCCGAGCTG
AGGGTAGTCG ACGTGGACGA CGAGGGCAGG CTTAGGCTCG ACGAGTACGA GAAGGCTCTG
TCGAGGGGCG CTAAGATAGT CGCGGTGACC CACGTGAGCA ATGTGACGGG CGTCGTGAAC
CCAGTGAAGG AGCTGTGCAG GCTAGCGCAC GACGCTGGCG CCTTCTGCCT CGTAGACGGC
GCTCAGAGCA CTCCGCATAT GCGGGTAGAC GTGAAGGATA TCGGGGCGGA CTTCTTCGCG
TTCTCGGGGC ACAAGATGCT CGGACCCATG GGTACGGGCG GGCTCTACAT AAGGGGGGAT
CTCGCCGAGA GGCTTGAACC CCCGTTCCCG GGCGGCGGCG CCATATCCCT GGTGAGCTGC
GCGGAGGACT CGTGTAGCGC CGAGTGGCTC CACCCGCCCC ACAAGTTTGA GGCTGGAACT
CCCAACGTTG CCGGCGCCGT GGGGCTCGCG AAGGCGGTGG AGTACTTGAG GAGCGTGGGC
ATGGAGGACG TGGAGGAGCA CGAGAAGAGG CTTACCGCGA AGCTACTCGA GGTGCTGGAG
GGTGTCGGAG CGAGGATTTA CGGCCCCAGG GACATGAAGG ATAGGCTCGG CGTGGTAAGC
TTCAACCTAG ACGGGTTGAC GCCGCACGAG GTAGCCTCAA TGCTCGACTT GGAGGGCATC
GCGGTGAGGA GCGGGCACCA CTGCGCCCTG CCGCTTGTGA AGAGGCTCGG GAGCCCGATG
GGCACCGTGA GGGCTAGCTT ATACCTCTAC AACACGCCCG AGGAGGTGGA GTACTTCGGC
GCAGTACTCG AGAAAATCAA AAAGCTAGCT ACGGGCTAG
|
|---|
| Protein sequence | MLDPYRVRRD FPILSKKVHG KQLVYFDNAA TSQRPLQVVE AVESFYKSLN ANIGRSVHEL
GLRATEAYED SRKIVAAFIG AKPEELVFTK NTTESINLAA YSLLVSGLIS RGDAIVVTRM
EHHSNLLPWV RVAKLAGAEL RVVDVDDEGR LRLDEYEKAL SRGAKIVAVT HVSNVTGVVN
PVKELCRLAH DAGAFCLVDG AQSTPHMRVD VKDIGADFFA FSGHKMLGPM GTGGLYIRGD
LAERLEPPFP GGGAISLVSC AEDSCSAEWL HPPHKFEAGT PNVAGAVGLA KAVEYLRSVG
MEDVEEHEKR LTAKLLEVLE GVGARIYGPR DMKDRLGVVS FNLDGLTPHE VASMLDLEGI
AVRSGHHCAL PLVKRLGSPM GTVRASLYLY NTPEEVEYFG AVLEKIKKLA TG
|
|---|
| |