| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0927 |
|---|
| Symbol | |
|---|
| ID | 4600750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 873638 |
|---|
| End bp | 874924 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639773706 |
|---|
| Product | hydroxymethylglutaryl-CoA reductase, degradative |
|---|
| Protein accession | YP_920331 |
|---|
| Protein GI | 119719836 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1257] Hydroxymethylglutaryl-CoA reductase |
|---|
| TIGRFAM ID | [TIGR00532] hydroxymethylglutaryl-CoA reductase, degradative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG AGCAGAGGAC TTCGCGTATA CCGGAGTTCT ACAAGAAGCC GATAGAGGAA
AGGCTGAAGA TAGTGGCTGA GTTCGCCGGG CTTACAGAGG AGGAGGTAGC CCTGCTCAAG
AACTTCGGCA ACCTCGACAG GAAGATAGCG GACTCCATGA TAGAGAACGT TATAGGCGCT
ATGAGCTACC CCTTCGCAGT CGCCGTGAAC TTCCTGATAA ACGGGAAGGA CTACATAGTC
CCGATGGTCA TAGAGGAGGC GAGCGTCGTC GCGGCTGCGA GTAACGCGGC AAGGGTTATG
AGGAGGGATG GCGGAATAAA GTCTGTTGCG ACCCAGCCCA TAATGATAGG CCAGATACAG
GTACTCGGTG TCAAGGATCC GTGGTACAAG CGGATGGTGT TGCTGGAGCA CAAGGAGGAG
ATACTCCAGA AGGCCAACGA GGTTGACCCC GTCCTCGTGA AGTTCGGGGG AGGCGCCAGG
GACTTGGAGG CGAGGGTTGT TGAGAGCCCC AGGGGACCGA TGCTGATAGT ACACCTACTC
GTGGATGTTC GCGACGCGAT GGGCGCTAAC GCCGTAAACA CGATGGCAGA GAAGGTTGCC
CCGATGATTG AGCGCTTGAC AGGTGGGCGC GTACTCCTGA GGATAATCTC GAACCTCGCG
GACAGGCGCC TGGTGAGATC CTGGGTGAAG GTGTACAAGG AGGACATAGG CGGCGAGGAG
GTCGTCGACG CGATAGTGGA CGCCTGGGCA TTCGCGGCGG CAGACCCCTA CAGGGCGGCT
ACCCATAACA AGGGCATAAT GAACGGGGTA ATAGCGGTGG CGCTCGCAAC AGCTCAGGAT
CACAGGGCGA TAGAGGCGGG TGCCCATGCC TACGCGGCTA GGACGGGGAG GTACATGCCT
CTCTCGACTT GGGAGAAGGA CCAGGACGGG AACCTGGTAG GAACGCTCGA AATGCCAATG
GCTGTTGGCA CGATAGGCGG TGCGACGAAA GTCCACCCGG TGGCGAAGAT AGCGCTCAAG
ATACTCGGCG TGAAGACGGC CACGGAGCTA GCCGAGGTCA TGGGGGCCGT GGGGCTCGCG
CAGAACTTCG CGGCGCTACG GGCGCTCGCG ACGGAGGGGA TACAGAAGGG GCACATGAGG
CTACACGCCA GGAACCTAGC CATAATGGCG GGGGCAACGG GTGACCTCAT AGACAGGGTC
GTCGAGATAA TGGTGAGCGA GGGTAAGATC AACTTCGCCT ACGCCCAAGA GCTCGTCAAC
AAGCTCTCAA AGGAGGGTCG AGCCTAG
|
|---|
| Protein sequence | MSSEQRTSRI PEFYKKPIEE RLKIVAEFAG LTEEEVALLK NFGNLDRKIA DSMIENVIGA
MSYPFAVAVN FLINGKDYIV PMVIEEASVV AAASNAARVM RRDGGIKSVA TQPIMIGQIQ
VLGVKDPWYK RMVLLEHKEE ILQKANEVDP VLVKFGGGAR DLEARVVESP RGPMLIVHLL
VDVRDAMGAN AVNTMAEKVA PMIERLTGGR VLLRIISNLA DRRLVRSWVK VYKEDIGGEE
VVDAIVDAWA FAAADPYRAA THNKGIMNGV IAVALATAQD HRAIEAGAHA YAARTGRYMP
LSTWEKDQDG NLVGTLEMPM AVGTIGGATK VHPVAKIALK ILGVKTATEL AEVMGAVGLA
QNFAALRALA TEGIQKGHMR LHARNLAIMA GATGDLIDRV VEIMVSEGKI NFAYAQELVN
KLSKEGRA
|
|---|
| |