Gene Tpen_0899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_0899 
Symbol 
ID4602222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand+ 
Start bp848322 
End bp848963 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content60% 
IMG OID639773678 
Productribonuclease HII 
Protein accessionYP_920303 
Protein GI119719808 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID[TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGAAGAG TAGCAGGTAT CGACGAGGCC GGTAGAGGGC CCATGCTGGG CCCCATGGTG 
GTGGCGATCG TCGTGTGCCC GGAGGAGAAG GTACCGTTGC TCAGGAACAT GGGGGTCAGG 
GATTCAAAGG CGCTAAGCCC CAGGAGGAGG CTCCTCTTAA GCAGGGCTAT ACCCAGCGTT 
GGGTGTAGCG TTAAGGTCAG GGTGGTCGAG CCCCAAGAGA TAGACTGCGC TGTTCGCGGA 
GAGTGCTACG AGAACCTTAA CCACCTGGAA GCCGCCGTGT TCGCGCAGCT AATAAACGAG 
GTCCTCTCGG AGGGGGAGCT GGAGGTGGTG TACATGGATA GCCCCGACCC CGTCCCCTCC 
AGGTTTGAGG AGAGGGTTCG AGCGTTACTC AAGGGGCAAG TGAGGATTGT GGCGGAGAAC 
GGGGCGGACG AAAAGTACAC CATAGTGGGT GCCGCTTCGA TAGTAGCCAA GGAGACCCGC 
GACGAGATAA TAAACGCTCT CAAAAAGACT TACGGAGACT TCGGATCCGG GTACCCCAGC 
GACCCCAGGA CTCTGAGGTT TGCGGAGGAG TGGGTGAGGA AACACGGGGA GCCCCCGCCT 
ATAGCCAGGA AGGAGTGGGC GACCTGGAAG AGGTTGCGGT AA
 
Protein sequence
MGRVAGIDEA GRGPMLGPMV VAIVVCPEEK VPLLRNMGVR DSKALSPRRR LLLSRAIPSV 
GCSVKVRVVE PQEIDCAVRG ECYENLNHLE AAVFAQLINE VLSEGELEVV YMDSPDPVPS 
RFEERVRALL KGQVRIVAEN GADEKYTIVG AASIVAKETR DEIINALKKT YGDFGSGYPS 
DPRTLRFAEE WVRKHGEPPP IARKEWATWK RLR