| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0710 |
|---|
| Symbol | |
|---|
| ID | 4601591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 660043 |
|---|
| End bp | 660579 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639773485 |
|---|
| Product | transcription factor TFIIE, alpha subunit |
|---|
| Protein accession | YP_920115 |
|---|
| Protein GI | 119719620 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAC ACGAAGCCTT GGCAGAGATT GCCGGAAAGA TGTTCGGGGA TAATGCCAAG
AAGGTGATGA TGGTTCTCGC CAGTAACGTT GAGGTCTCCG ACGAAGACCT GGCGAAGGAC
CTGAAAATGG ATCCGCCCGA GCTTAGGAAG TTGCTCAATG ATCTCTTCGA AGCGAGGCTC
GTTAAGTACC GGAGAGCGCG CGACGAGAAC ATAGGTTGGT ACAAGTACTA CTGGCGTATA
ACCGATGAGC CGATCCAGCA AATACTCAGT GATAGGAAGA GGCTTACGCT AAGTATTCTA
GAAAAAGTGC TTTCGCTGGA GGAGAACTCC GAGACATACG TATGCCCTAA GTGCGGCACA
CGGTACACTG TGGATGAGGC GGAGAACAAC AACTACACGT GCGAGGTATG CGGCGAGGTC
CTCGAACCTT TCGACAACAC GCACCGAGTC GAGAAACTTA AGAGGGCGAT CGAACTACTA
GGAAACTGGG ACCCCTCTCC AAAACAACAA GCATCGCGCG CCATCCCTCA TGCATGA
|
|---|
| Protein sequence | MNAHEALAEI AGKMFGDNAK KVMMVLASNV EVSDEDLAKD LKMDPPELRK LLNDLFEARL
VKYRRARDEN IGWYKYYWRI TDEPIQQILS DRKRLTLSIL EKVLSLEENS ETYVCPKCGT
RYTVDEAENN NYTCEVCGEV LEPFDNTHRV EKLKRAIELL GNWDPSPKQQ ASRAIPHA
|
|---|
| |