Gene Tpen_0653 details

Gene Information

• Locus tag: Tpen_0653
• ID: 4601611
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 604209
• End bp: 604832
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 639773426
• Product: 30S ribosomal protein S3Ae
• Protein accession: YP_920058
• Protein GI: 119719563
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1890] Ribosomal protein S3AE

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00442858
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGCAA GGGCAAAGAC GAAGGACAAG TGGTCGATGA AGAAGTGGAT AAAGGTACTC 
GCTCCTAAGG CCTTTGGCTT CGCAAACCTA GGGCTGATAC CCGCTGATGA GCCGGAGAAA 
GCTCTTGGAC GCACTGTAGA GGTCAGCTTC TACGACATAA CTAAGGATGT CTCTCAGCTA 
CACATCAAGC TAAAGTTCCA GATAGTCAAG GTGGACGATG GAATAGCACT GACACAGCTT 
AAACTGATGG AGATGACTAG GGACTATATA AGGAGCCTTG TCAGGAGGGG TACGAGCCGC 
GTGGACGCTA TACTGGACGT GCAGACAAAG GACGGAGTGA AGATGCGTGT AATGGCTCTG 
GCAGTGACCG TTAGCAGGAT TAAGACTTCG CAGAAGAAAG CCATAAGGAG GATAATGTTC 
GACATAATAA GCGAGAAAGC GGCTAGCCTG GACTTTGACA CGTTCATCCA GCAAGCAGTC 
ATAGGCACGA TGGCCACCGA AATGCAGATG CAGGCGAAGA AGATATACCC CATCAAGAAA 
GTCGAGGTCT ACAAGATAAA GGTGCTAACA CCTACCACCG AGATTCCGCT AGCCCTCCCG 
GAGCAGGTAT TGGCGAAGCA CTAA 

 

Protein sequence

MSARAKTKDK WSMKKWIKVL APKAFGFANL GLIPADEPEK ALGRTVEVSF YDITKDVSQL 
HIKLKFQIVK VDDGIALTQL KLMEMTRDYI RSLVRRGTSR VDAILDVQTK DGVKMRVMAL 
AVTVSRIKTS QKKAIRRIMF DIISEKAASL DFDTFIQQAV IGTMATEMQM QAKKIYPIKK 
VEVYKIKVLT PTTEIPLALP EQVLAKH