| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0623 |
|---|
| Symbol | |
|---|
| ID | 4601410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 579491 |
|---|
| End bp | 580561 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639773397 |
|---|
| Product | DNA primase, large subunit |
|---|
| Protein accession | YP_920030 |
|---|
| Protein GI | 119719535 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2219] Eukaryotic-type DNA primase, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.426261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCCAA GCTCCAGCGC ACACACGATC AGAGTTATAT TAGATACAAA GGACTACGCT
AAATACCCTT TCCTGAGAGA GGCTGTAGAA AGCATCAGGG AGACTGGGTT AACGCTTGAA
GATCTAGAGA GGTTCGACGC GGTAGACGAC GCGAAAGAGA AAATAAAAAG TGTAATAACG
CGCGGCGAAT ACCCTTCCAT CGACGACTAC CAAAACGAAG TCCCTGCTTT TCTAACATGC
ATAGTTATTC TCTCCGAGAT CGGCGACAGC GCACTGAGCG AAAGATTCGC CGTAGCATTC
TCTAAAAAAG TGAGTGAAAA CCTGAAAGAG GAAGAGAAGG AGGAACGCAT CGAGATAGCT
TTCCACATAG CTAGCTCTGT TCTCGGATGG TCCTTCGACG TAGACGAAAA AGGAACGTTG
ATCAGGTTGA GATACAAGGA CTACCTCTCT GGGGTCCCAG AGTACACCGG GGAATGGAAG
CTCGTGAACA GGTTGCTGGA TAAAGGTTAC GTGGAGGTTC GAAAAGAGAG TTTCCTGAGG
CTCATAGAAA CCGGGGTGAA AAAGTACGTG TTAAGGCTTA TTGAGCAAAC TAAGGTCGAT
GAGGCAAGGA TACCTCCTAA GCTTTACAGC GCAGTAGAAG AGATAGCCAG CATTTGGTCT
AAGCAACGCG AGGAGCTGTT AACGTATGCG AGGAACGCCT CTAAGGGTAA AAGGGAGGAC
CTCTTTCCCC CCTGCATTCG CGCGATAATC CAGGACATCT CGGCTGGGAA AAACCTTCCT
CACAGCGCCA GGTTTGCGCT TGCATCTTTC CTTCTAAGCG TTGGGTTCTC TGTTGACGAG
GTACTGGAGG TGTTCAAGCT TTCGCCGGAC TACCGGGAGG ATATCGCCCG GTACCAAGTG
GAACACATAG CCGGTATGCG CGGCTCCAGG ACTAAGTACC TCCCATACAA GTGTGATAAC
ATGAGGTCTT ACGGTCTCTG CAGGTGGAGA TGCGAAAACA TAAGGCACCC GTTACAGTTT
TTCTTTAAAG CGGCGAGGGG GCGTGCACCG CGCGTCACAG AGCTCAGCTA A
|
|---|
| Protein sequence | MWPSSSAHTI RVILDTKDYA KYPFLREAVE SIRETGLTLE DLERFDAVDD AKEKIKSVIT
RGEYPSIDDY QNEVPAFLTC IVILSEIGDS ALSERFAVAF SKKVSENLKE EEKEERIEIA
FHIASSVLGW SFDVDEKGTL IRLRYKDYLS GVPEYTGEWK LVNRLLDKGY VEVRKESFLR
LIETGVKKYV LRLIEQTKVD EARIPPKLYS AVEEIASIWS KQREELLTYA RNASKGKRED
LFPPCIRAII QDISAGKNLP HSARFALASF LLSVGFSVDE VLEVFKLSPD YREDIARYQV
EHIAGMRGSR TKYLPYKCDN MRSYGLCRWR CENIRHPLQF FFKAARGRAP RVTELS
|
|---|
| |