| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0622 |
|---|
| Symbol | |
|---|
| ID | 4601409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 578350 |
|---|
| End bp | 579519 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639773396 |
|---|
| Product | putative DNA primase, small subunit |
|---|
| Protein accession | YP_920029 |
|---|
| Protein GI | 119719534 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1467] Eukaryotic-type DNA primase, catalytic (small) subunit |
|---|
| TIGRFAM ID | [TIGR00335] DNA primase, eukaryotic-type, small subunit, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACCGCG CGTCACAGAG CTCAGCTAAG TCCGACATGG CACTGATTCG GGGGCTTTTC
GCCCGGTACT ACGCGAGAAC CAGTGTGGAG GCTCCATCAG AGCTCTCAAA GAGGGAGTTC
GCGTTCTCAA TGTTTAATTC AACCTCGATG ATTAGGCATC TATCCTTCAG TACCCGAGAA
GAGCTCGACG ACTACATCCG CGTAAACGTC CCCCAGCACG CATACTACTC CTCCGCGTAC
TACCAGTACC CCTCAGCCCA GGAAATGGGG GAGAAAGGGT GGCTCGGCGC AGACCTAGTC
TTCGATATCG ATGTAGACCA CATCCCCACC CCTTGCAAGG ACCTCCACGA TCGCTGGCGT
TGCCAGGACT GCGGTGCGGA GGGCTGGGGA TTCACGAAGA AATGCCCCTC CTGCGGTAGC
GAGCGGCTCG AGTGGAGCAA GTGGGTATGT AGTACTTGCA TCAACGTAGC CAGAGAGGAA
ATGATCAAGC TCGTCGAGAT CCTGGAAGAC GACTTCGGGT TCGATAGAGC AGAGATGCGA
GTAGCTTTCT CCGGACACAG GGGGTTCCAC CTACACGTTG AAAGCGAAGC TGTAAAAGAC
CTAGACCAGG ACGCAAGAAG AGAGATCACC GACTACGTGA GAGGCATAGG CATAGACGTG
AAACTCTACC TGAAGCCCGC CGGGAAAAGT CTGTACACGT ACAAGTACTC TGCCACCTCG
CCGGGGTGGG CGGGGAGAAT CGCGAAGTAC CTATTGCTGA GGCTCCTCCA AGCTGGCGAG
AATGGAGAGC TGGAATCCCT CTCCATGGAG TACGAGCAGT GGGAAAAGAC GATAAAGGAG
GCCGTCTCCG AGCTTTCCGT AAAAGTCGAC GAAAAGGTCA CGATAGACAC AAAAAGACTC
ATAAGACTAC CTGGAAGCCT CCACGGGAAA ACAGGGCTAA AGGTCTTCTC GATGAGCGTA
AACGAGCTCG AAAACCTCGA CTCAGACTCC ATTCTAAAGA GAGCGATAGT ATTTCCGGAT
GAAAAGGTGC AGGTTGCCAT AGAGAAGCCT CCGAGAAAAG TTCTCTACTA CAGTCTTGAA
AAGGTGGAAG AGGGAAAACT GGAGGTCCCC CTCTTCCTCG CTGTCTACAT GGTTCTCAAC
GGAAAGGCCA GGCTACTGAA CTTCAGGTGA
|
|---|
| Protein sequence | MHRASQSSAK SDMALIRGLF ARYYARTSVE APSELSKREF AFSMFNSTSM IRHLSFSTRE
ELDDYIRVNV PQHAYYSSAY YQYPSAQEMG EKGWLGADLV FDIDVDHIPT PCKDLHDRWR
CQDCGAEGWG FTKKCPSCGS ERLEWSKWVC STCINVAREE MIKLVEILED DFGFDRAEMR
VAFSGHRGFH LHVESEAVKD LDQDARREIT DYVRGIGIDV KLYLKPAGKS LYTYKYSATS
PGWAGRIAKY LLLRLLQAGE NGELESLSME YEQWEKTIKE AVSELSVKVD EKVTIDTKRL
IRLPGSLHGK TGLKVFSMSV NELENLDSDS ILKRAIVFPD EKVQVAIEKP PRKVLYYSLE
KVEEGKLEVP LFLAVYMVLN GKARLLNFR
|
|---|
| |