Gene Tpen_0619 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_0619 
Symbol 
ID4601325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand
Start bp575902 
End bp576417 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content49% 
IMG OID639773393 
ProducttRNA-splicing endonuclease subunit alpha 
Protein accessionYP_920026 
Protein GI119719531 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1676] tRNA splicing endonuclease 
TIGRFAM ID[TIGR00324] tRNA intron endonuclease 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTAGTAC TGGATCCTCT TCAAGGAAAC CAGTTGTACT TCAAAGGAGG TTTCTACGGA 
CGCTTCTTCA CGGTGCCCAA GCCGAAGCTC CCAGACGTAC GCAAAGAGCT AGAACTGTCT
CTTTTCGACG CAATGTACCT TCTGGAACAG GGCTGCCTAG ACCTTAAAAG AGAGGACGGG
AGCCCTGTTT CTCCCTCGGA GCTTTTCGAG CTTGCATCCA GAATCTATGA AAACTTCTAC
GACGCTTATG CTGTTTACAA GGACCTGAGG GGAAGAGGCT ACGTAGTGAA GTCGGGAATG
AAATTCGGTT CCACGTTTGC CGTGTACCAG TTCGGTCCCG GCATTGACCA CTCGATCTTC
TTGGTGGATG TCTTGAAGTA TAACGACAAG CTTGACCCTA TACAGATCAT AAGGGCTGGG
AGACTTTCGC ATTCCGTGAG GAAACACTTC ATACTCGCTT ATAGAGACCC GGTAGACGGA
AAGATTCAAT ACTTCTCGTT TAGGTGGCTT ATGTAG
 
Protein sequence
MVVLDPLQGN QLYFKGGFYG RFFTVPKPKL PDVRKELELS LFDAMYLLEQ GCLDLKREDG 
SPVSPSELFE LASRIYENFY DAYAVYKDLR GRGYVVKSGM KFGSTFAVYQ FGPGIDHSIF
LVDVLKYNDK LDPIQIIRAG RLSHSVRKHF ILAYRDPVDG KIQYFSFRWL M