Gene Tpen_0546 details

Gene Information

• Locus tag: Tpen_0546
• Symbol: rpl10e
• ID: 4600503
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 496533
• End bp: 497039
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 639773317
• Product: 50S ribosomal protein L10e
• Protein accession: YP_919955
• Protein GI: 119719460
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0197] Ribosomal protein L16/L10E
• TIGRFAM ID: [TIGR00279] ribosomal protein L10.e

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTCTAA GACCCGGTAG GTGCTACAGG CACTTTGGTA CTCCACCGTA TACACGCCTT 
GAGTACATAA AGAGCAACCC CCCAGTACTT ATTCCGAAGT TTGATCTAGG CAACCCTAAG 
GGGAACTTCA ACACTGTCCT CAAGCTCGTG GTTATGAGAC CCGGGCAGAT AAGGGCTAAC 
GCGCTCGAAG CTGCCAGGCA GCATGCCAAC AAGTACCTAA CGGCGAAGGT CGGGGAGGCA 
AACTTCTTCC TCAGAGTGGC GGTGTTTCCG CACCACATCC TCAGAGAAAA CAAGATGATG 
GCCATGGCGG GCGCGGACAG GCTTCAGGAC GGCATGAGGC TTTCCTTCGG AACCCCCGTT 
GGGCGCGCAG CCAGGGTGGA GGCGGGTCAG ATCGTTATGC TCGTCAAGGT CGATGCTAAG 
AACATTGACC ATGCGAAGGA GGCTTTGAGG AGGGCTGCCT CGAAGATACC TCTTCCCAGC 
AGGATAATAG TGGAGCAGGC ACAGTAG 

 

Protein sequence

MPLRPGRCYR HFGTPPYTRL EYIKSNPPVL IPKFDLGNPK GNFNTVLKLV VMRPGQIRAN 
ALEAARQHAN KYLTAKVGEA NFFLRVAVFP HHILRENKMM AMAGADRLQD GMRLSFGTPV 
GRAARVEAGQ IVMLVKVDAK NIDHAKEALR RAASKIPLPS RIIVEQAQ