Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpen_0461 |
Symbol | |
ID | 4600988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermofilum pendens Hrk 5 |
Kingdom | Archaea |
Replicon accession | NC_008698 |
Strand | - |
Start bp | 421558 |
End bp | 422574 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639773228 |
Product | putative rRNA pseudouridine synthase |
Protein accession | YP_919873 |
Protein GI | 119719378 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCCGCCA AGTACCTTGC AGCGACCCCT TCCCGCGAGA TATACGTGAG GTCCGAAGAC GAGACGGATT TTTCCTACGG GTGGCTCCCA GAAGAGCGAC CGCCGGAAGT ACTCCTCAAG TACTCCGTCA TAAACCTAGA CAAACCCGTG GGACCCTCAA GCCACGAGGT TGTAGCGTGG CTTAGGAAGC TCCTAGGGAT AGAGAGAATA GCCCACGCTG GCACGCTGGA TCCAAAGGTT TCCGGGGTTC TTCCCATAAC GTTGAACAAC GCTGTACGCG TACTACCTGT GCTGCTAAAA GAGGACAAGG AGTATGTGTG TGTAATGAGG CTGCACGGCG ACGTCGACCC GGAAAGGCTT GAAAGAGTAG TCAGCATGTT TAAAGGCAGG ATTTACCAGA GGCCACCGCT AAGGTCTGCT GTGAAGAGGG AGGTTCGAAT AAGGCAGATC TACGATATTA GGCTTTTAGA GTTTAACGAG AGGACTGCCC TCCTCCATGT CTGGTGCGAA GCTGGAACCT ACATGCGTAA GCTGTGCCAC GATATCGGAG AGATACTCGG TGTCGGGGCG CACATGCAGG AACTTAGAAG GATCAGGTCT GGGAGTCTCT ATGAGGACAG GAACTGCTCT ACGATGCACG ACGTCGTGGA CGCGTACTAT ATCTGGAAAG AGAGAGGGAT AGACCACTTT CTACGGCAAG TCTTTCTGCC TGTTGAAGCA GCGATCCAGC ATCTTCCAAA AGTATGGATT AGAGACTCCG CGGTAGATGC TGTATGCCAT GGAGCCCCTC TGGCTGTCCC CGGGATAGTA AAGCTAGAGG GAGGTATAAA GGTGAACAGC ACAGTGGCTA TTCTCACGCT GAAAGGCGAG CTAGTAGCCA TCGGGAAAGC GCAAATGACC ACGGAGAAGA TGCTTACAGA GTCTAGCGGG ATTGCCGTGA AAACGGAGCA CGTTGTCATG GATCCGGGGA CCTACCCAAG GAAGTGGAAG TCCCATAAGG AGGCCTCAGG CCCCTAG
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Protein sequence | MPAKYLAATP SREIYVRSED ETDFSYGWLP EERPPEVLLK YSVINLDKPV GPSSHEVVAW LRKLLGIERI AHAGTLDPKV SGVLPITLNN AVRVLPVLLK EDKEYVCVMR LHGDVDPERL ERVVSMFKGR IYQRPPLRSA VKREVRIRQI YDIRLLEFNE RTALLHVWCE AGTYMRKLCH DIGEILGVGA HMQELRRIRS GSLYEDRNCS TMHDVVDAYY IWKERGIDHF LRQVFLPVEA AIQHLPKVWI RDSAVDAVCH GAPLAVPGIV KLEGGIKVNS TVAILTLKGE LVAIGKAQMT TEKMLTESSG IAVKTEHVVM DPGTYPRKWK SHKEASGP
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