Gene Tpen_0415 details

Gene Information

• Locus tag: Tpen_0415
• ID: 4600491
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: -
• Start bp: 377433
• End bp: 378101
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 639773180
• Product: DNA-directed RNA polymerase subunit E'
• Protein accession: YP_919827
• Protein GI: 119719332
• COG category: [K] Transcription
• COG ID: [COG1095] DNA-directed RNA polymerase, subunit E'
• TIGRFAM ID: [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGACCAC CAGGGAAAGG CGTCCCGGCC TCCTCCGCGC GATGCGTAAT CTTTTTTACT 
GCGCGTTCTT CGAATTGGCT TGTGTATAAG TTAGTAGAGT TTGCCGATGT GATAAGGATA 
CCGCCCAGGC TGTTTGGACA GCCGTTGAAA GAGGCTTCAC TGGAAATTCT AAAGGAAAGC 
TTCGAGGGAC GCGTAGTACA AGGCGTCGGG CTCGTTATCT CCATACTCGA TGCTGAGGTC 
TCGGAGGAAG GTTTTCTGAC GTGGGGCGAC GGGGCGAGCT ACCACGAGGC AAGGTTTACG 
GCGCTCGTTT TTAGCCCTGT AAACAACGAG GTTGTCGAAG GCGAGGTTGA CTTGGTGGAG 
AATATCGGGC TGACGGTCCG GCTAGGCCCC GTGGAGGGCT TTGTGCACAA GTCGCAGATA 
TACCCCTCCA GGAACATAAC CTACGATAGG GAGAACGGCG TAGTCATCAT CCAGGACGAG 
AAAGGTACCC GGACGATTAG GAAGGGCGAC GTGGTGAGGG GGAGGGTTGT CGGTGTAAGC 
TACGATGAGC AGAGGGGTCA GTTGAAGATC AGGCTGACCA TGCGGCAACC CTACCTGGGC 
AAAAGAGAGT TCATCATGGA AATGATAGAG AAGAGTAAGG CGGGTGGCCA GGGTGCCGGC 
AAAGCGTAG 

 

Protein sequence

MRPPGKGVPA SSARCVIFFT ARSSNWLVYK LVEFADVIRI PPRLFGQPLK EASLEILKES 
FEGRVVQGVG LVISILDAEV SEEGFLTWGD GASYHEARFT ALVFSPVNNE VVEGEVDLVE 
NIGLTVRLGP VEGFVHKSQI YPSRNITYDR ENGVVIIQDE KGTRTIRKGD VVRGRVVGVS 
YDEQRGQLKI RLTMRQPYLG KREFIMEMIE KSKAGGQGAG KA