Gene Tpen_0377 details

Gene Information

• Locus tag: Tpen_0377
• ID: 4602145
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 342454
• End bp: 343155
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 639773138
• Product: fibrillarin
• Protein accession: YP_919789
• Protein GI: 119719294
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1889] Fibrillarin-like rRNA methylase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.939654
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAGGC CTGTAAAAGT GGTGGAACAC GAGAAATTCC CAGGAATATA CGTCGTGGAG 
TACGAGGACG GGACCAAAAA GTTGGCAACT GTTAACCTGG CTCCAGGCGT AAAGGTTTAT 
GATGAAACAC TAATCCAGCA CGGCGACAAA GAGCTCAGAA CATGGAATCC TTATAGAAGC 
AAGCTAGCCG GCGCCATTCA TAAGGGGATA ACCATTAACC CGATAAAGCC CGGCGTCAAG 
GTCCTCTACT TGGGGGTAGC CTCTGGAACC ACGCCTAGCC ACGTCTCCGA CATAATCGGA 
CCTAAAGGTG TTCTCTTCGG CGTAGAGTTC GCTCCGCGCG TTATGCGTGA ATTCATCGAG 
AAGGTAGCAG TTCACAGGGA GAACGTAGTT CCACTCCTCG CCGACGCCAG GTTCCCGACG 
AAGTACGCGC ACGTAGTTGA GCTGGTCGAC GTCGTATACG CCGACATAGC GCAACCCTTC 
CAGGCAAAGT ACGTTGCGGA CAACGCGGAT ATGTTCCTTA AAAGCGGAGG GTACATTATG 
ATGGCTATAA AGGCTATGAG TATAGACGTA ACCGCGACCC CCTCGGAGAC GTATAAGAGG 
GAGATAACTC ACCTAGAGGA AAGAGGCTAC AAAGTAAAGG AGGTAAAGCA CCTAGAACCC 
TATGATGAGG CTCACGCATT TGTAGTTGCC CAGAAACCCT AA 

 

Protein sequence

MIRPVKVVEH EKFPGIYVVE YEDGTKKLAT VNLAPGVKVY DETLIQHGDK ELRTWNPYRS 
KLAGAIHKGI TINPIKPGVK VLYLGVASGT TPSHVSDIIG PKGVLFGVEF APRVMREFIE 
KVAVHRENVV PLLADARFPT KYAHVVELVD VVYADIAQPF QAKYVADNAD MFLKSGGYIM 
MAIKAMSIDV TATPSETYKR EITHLEERGY KVKEVKHLEP YDEAHAFVVA QKP