| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0376 |
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| Symbol | |
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| ID | 4600776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermofilum pendens Hrk 5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008698 |
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| Strand | + |
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| Start bp | 341219 |
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| End bp | 342457 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639773137 |
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| Product | Pre-mRNA processing ribonucleoprotein, binding region |
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| Protein accession | YP_919788 |
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| Protein GI | 119719293 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.599925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATGA ATGTTTACTT GCACTTCACT CCTCTGGGAC CGGTGCTCGT AAACGAGGAA
GGACAGATAC TCGCCAGCGA CATGATAACG CAGGATAAGG ATCCCGAGAA GATCGCCCGC
TTCATGTACG AGCTGGAAAC TGGAAACGTT CCAGAAAGGG TTCTAGGTTT TCTAGCCTCT
AGTCTCTCAA AGGAATACAC GCTGGCAGTA GAGGACGAGG AAGTGGCCAG AAAGATCTCC
CAAAGCTTAA AGGAGGTGAA AGTAACCGTG CAACCCGGGA GTAAGGTCCA CAGAGCTCTC
CGAGAGCAGC AACAAGCAAT CGTCGAGAAA GCATTCGGCA TATCATACTC GGACTATTAC
AGGCTAGTAC GAGAGGCAAC GATCCTGCTG GCACGGTGGA AAGTGAAGGA AGTCGCCGAA
AAAAGAGACC TCTACGTAGC GCAAGCAGTT AACGCGCTGG ACGATGTAAA CAAGACGATA
AACCTCTTCG CTTCGAGAGT GAGAGAGTGG TACGGGCTCC ACTTCCCGGA GCTTAACGAT
ATAGTCGAAG ACCACGAGGA CTACTTCAAA ATAGTGAGCA AACTGGGTTC TAGGAGCAAC
ATTTCCCTGG AAAAACTCAA AGAGCTGGGC TTTAAGGATG ACCTCGCCCA GAAAATAGTC
AAAGCAGCTT CCAACAGCAT GGGAGCCGAG CTAACAGAGT TCGACCTCAA CGCCATAAGG
CTCCTATCCG ACGCTGGACT CCAGCTCTAC AGCATACGGA GAAACCTAGA GAAGTACATA
GACGAGGCGA TGTACGACGT AGCTCCCAAC ATAAGGGGTC TCGTCGGGCC AACCCTGGGT
GCTAGGCTGA TTTCGCTCGC CGGAGGCTTA GAAAAGCTTG CCAGGTTGCC CGCGAGCACG
ATCCAGGTTC TGGGCGCCGA AAAAGCTCTC TTCAGAGCAC TCAGATTCGG CGCACGTCCT
CCCAAGCACG GAGTGATCTT CCAGCACCCG TACATACATA AATCGCCGAA ATGGCAAAGA
GGTAAGATTG CAAGGGCTCT TGCAGGCAAA CTCGCGATCG CTGCCAGGAT CGACGCGTTC
ACGGGAGAGT ATAAGGCAGA CGAGCTACGA GAAGACCTGG AAAAGAGGAT AGAAGAAATA
AAGACACTCT ATGCAAAGCC TCCCGCAAAG CAGGCTAAAA AAGAGCCTGC ACAGAAAAAG
TTTAGGGGGC ACGGCAAGAG GAAGGGTGAG AGCAAATGA
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| Protein sequence | MQMNVYLHFT PLGPVLVNEE GQILASDMIT QDKDPEKIAR FMYELETGNV PERVLGFLAS
SLSKEYTLAV EDEEVARKIS QSLKEVKVTV QPGSKVHRAL REQQQAIVEK AFGISYSDYY
RLVREATILL ARWKVKEVAE KRDLYVAQAV NALDDVNKTI NLFASRVREW YGLHFPELND
IVEDHEDYFK IVSKLGSRSN ISLEKLKELG FKDDLAQKIV KAASNSMGAE LTEFDLNAIR
LLSDAGLQLY SIRRNLEKYI DEAMYDVAPN IRGLVGPTLG ARLISLAGGL EKLARLPAST
IQVLGAEKAL FRALRFGARP PKHGVIFQHP YIHKSPKWQR GKIARALAGK LAIAARIDAF
TGEYKADELR EDLEKRIEEI KTLYAKPPAK QAKKEPAQKK FRGHGKRKGE SK
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