| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0325 |
|---|
| Symbol | |
|---|
| ID | 4600976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 290946 |
|---|
| End bp | 293375 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639773085 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_919737 |
|---|
| Protein GI | 119719242 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG AGTTTCGCTT ACCCAAGGAA TACAACTTCA AGGCGGTGGA GGGTAAGTGG
CAGAGATTCT GGGAGGAGAA GGGCATATAC AGGTTTGACC GGAAGGACAG GAGTAGGCCT
GTCTACGTCA TAGATACGCC TCCCCCGTAT CCCAGCGGAG ACCTCCACGT GGGGAACGCG
CTGAACTTTT CCTACATAGA CTTCGTGGCA AGGTACAAGA GGATGAGAGG GTACAACGTG
CTCTTCCCGC AGGGCTGGGA TTGCCACGGG CTTCCAACGG AGGTTCGCGT GGAGAAGGCT
GTCGGCAAGA GGAAGAGTGA AATGGATCCC AACGAGTTCC TGAGGCTTTG CCGCGAGTAC
ACGTTGAAGT GGATAGAGAG TATGAAAGCC GCCCTTAAAG GCTTAGGCTT AAGCATCGAC
TGGTCTACGG AGTACAAAAC TATGGACCCG GATTACTGGA GGAGAACACA ACTGAGCTTC
GTCCTAATGT ACAACAAGGG GTTGATCTAC AGGGGGGAGC ACCCGGTCAT ATGGTGTCCA
CGTTGTGAAA CGGCAATAGC CGAAGCTGAA GTGGAGTACG AAGAAAGGGA TCGGCCGTTG
TACTACTTCA AGTTTGGCGT TGAAGGAACA GGAGAAGAAC TCGTAGTAGC ATCCACGAGG
CCCGAGTTGT TGGCTTCTTG CGTGGCCGTC GCCGTGAACC CATCCGATGA GAGGTACAAG
CACCTCGTGG GAAAAAACGC TGTAGTGCCT ATCTACGGTA GAAAGGTGCC CATAATAGCC
GACGAAGCCG TGGATAAGGA CTTCGGCACA GGCGCAGTCA TGGTGTGCAC GTACGGAGAT
AAGACGGACG TGAAGTGGCA GAAAAAGTAC AACCTACCGG TGATCATCTC GATAACCGAG
CAGGGAACAA TGAACGACAA CGCCGGACCC CTTAAGGGCT TAAAGGTGGA GGATGCCAGA
AAGAAGATTG TCGAAATGTT GAAGGAAAAC GGTTTGCTCG TGAAGGTTGA GAGCATAAGA
TCCACTGTCG GGACCTGTTG GCGGTGCCAC ACCCCCGTAG AGATAATACC CAAGAAGCAG
TGGTTCGTAC GCTCGACTGC GCTCAACGAA AAAGTTCTCG AAGAAGGGAG GAAGGTGAAC
TGGGTTCCAA GCTACATGTA TAAAAGGCTC GAAAACTGGG TTCTGAGCCT GGACTGGGAC
TGGGTAATAT CGAGACAAAG GCTCTTCGCG ACCCCCATCC CCGTGTATTA CTGCAAGGAC
TGTGGAGCCG AGCTAGTAGT TCCTCCAGAA AAGCTACCGA TAGACCCTAG GTTCGACCCG
CCACCATTCG AGAAGTGTCC AAAGTGCGGT TCAAAGAACA TAGTGCCGGA GAGAGACGTT
ATGGACACGT GGATGGATTC GAGCATAACT GCCGCGGTGC ACGCCGGCTG GCCTGACAAC
TTCGACGAAA GGCTTTTCCC CGCCGACCTT CAGCCAAACG GCTACGACAT TATAAGAACG
TGGGACTACT ACCTGATATT GCGAGGCGTA GCTCTCTTCG GACGTTCACA GTTCAAAACA
GCCCTAATCA ACGGGATGGT GAGAGGCACA GATGGGAGGA TGATGCATAA GAGCTACGGG
AACTATGTTG CCGTGCAGGA GGTTCTCGAG AAGTACGGTG CAGACAGCTT CAGGCTTTGG
GTTGCCCTCG CAGCCGCTAC AGGGCAAGAC GTCAGGTTCT CCTGGGACGG CGTCGACTAC
GCGCACAGGT TCCTAGTTAA GGTGTGGAAT CTCGCGAGGC TTGCAAGCCC GTTTATAGAG
GACGTGAGAG AAGTCCCCCT CGGCAACCTC TCGCATGCTG ACCACTGGAT ACTGCGCGAG
CTCGCTTCAA CGGTGACTCG CGTAACGCAA GCCCTTGAAA ACTACAACTT TCAGGAAGCC
TCTCAGGCTC TCGTAGACTT CACTTGGCAC AAGCTCGCCG ACCACTACGT CGAGGCTGTG
AAGCACAGAC TTAGCAGGAG CGACGAAGCC GCGAAGTACA CGCTGTACGT AGTACTCATT
AAGACGTTGC AGATGCTCTC GGTCTTCGCG CCCCACATCT CCGAGGAGAT CTACGTCGAC
GTTTTGAAGA AGGCTGGAGG CTGGGAGAGC ATAACGGTGT CCCCATGGCC GGAGCCGCCG
GCCTACGACG AGGAGAAGGC CAGGGTAGGA GACATACTGA TAGCGGTTCT GGCGGAGGGT
AGGCGCGCCA AGCACGACGC TAGGATACCG CTTAACAAGG AAGTAAGCGC GGTGTACTTG
TACTCGGAGA AGTACTCAGA GGAGCTGAAA GCAGTTGTGG ACGACGTAGC GGGCACCCTG
CGCGCCAAGA AGGTAGAGGT CGTAAGGGGA GAGCCCGCGG GCAGAAAGGT ACCCGAGTAC
CCGGAGATTT CGATACAGAT TTCGCCGTAA
|
|---|
| Protein sequence | MTVEFRLPKE YNFKAVEGKW QRFWEEKGIY RFDRKDRSRP VYVIDTPPPY PSGDLHVGNA
LNFSYIDFVA RYKRMRGYNV LFPQGWDCHG LPTEVRVEKA VGKRKSEMDP NEFLRLCREY
TLKWIESMKA ALKGLGLSID WSTEYKTMDP DYWRRTQLSF VLMYNKGLIY RGEHPVIWCP
RCETAIAEAE VEYEERDRPL YYFKFGVEGT GEELVVASTR PELLASCVAV AVNPSDERYK
HLVGKNAVVP IYGRKVPIIA DEAVDKDFGT GAVMVCTYGD KTDVKWQKKY NLPVIISITE
QGTMNDNAGP LKGLKVEDAR KKIVEMLKEN GLLVKVESIR STVGTCWRCH TPVEIIPKKQ
WFVRSTALNE KVLEEGRKVN WVPSYMYKRL ENWVLSLDWD WVISRQRLFA TPIPVYYCKD
CGAELVVPPE KLPIDPRFDP PPFEKCPKCG SKNIVPERDV MDTWMDSSIT AAVHAGWPDN
FDERLFPADL QPNGYDIIRT WDYYLILRGV ALFGRSQFKT ALINGMVRGT DGRMMHKSYG
NYVAVQEVLE KYGADSFRLW VALAAATGQD VRFSWDGVDY AHRFLVKVWN LARLASPFIE
DVREVPLGNL SHADHWILRE LASTVTRVTQ ALENYNFQEA SQALVDFTWH KLADHYVEAV
KHRLSRSDEA AKYTLYVVLI KTLQMLSVFA PHISEEIYVD VLKKAGGWES ITVSPWPEPP
AYDEEKARVG DILIAVLAEG RRAKHDARIP LNKEVSAVYL YSEKYSEELK AVVDDVAGTL
RAKKVEVVRG EPAGRKVPEY PEISIQISP
|
|---|
| |