| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0304 |
|---|
| Symbol | |
|---|
| ID | 4601127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 270252 |
|---|
| End bp | 272450 |
|---|
| Gene Length | 2199 bp |
|---|
| Protein Length | 732 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639773065 |
|---|
| Product | AAA family ATPase, CDC48 subfamily protein |
|---|
| Protein accession | YP_919717 |
|---|
| Protein GI | 119719222 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATAACG AAGGAAAAGT CCCCGAGATA GAGCTCAAAG TGCTTGAGGT AAGACAGCAC
GAGGCTGGGA GGGGCAGGGT GAGGATAGAC GAGGACGCCA TGGAGGCTCT GGGAATAAGT
GCTGGTGATG TTGTGGAGAT AGAGGGTAAG AGGAAGACTG TCGCCATCGC TTGGCCTGGA
TACGCCGAGG ACAAGGGGAA AGGCATAATC CGAATGGATG GCTGGACGAG GAAGAACGCC
GGCGTCAGTA TAGGCGACAA AGTCAAGGTT AGAAAGGCTG AGGTGAAGCC GGCCCAGTTC
ATAAGACTTG CCCCGGTGTC TATGACACTC GCCGTCGACG AGAACTTCGT GGCTTACGTG
AAGAAGAGGC TTGTTGACAG GCCGATAATT GAGGGCGACG TTATACAGAT CCCCGTGCTA
GGCCAGGTAA TTCACTTCAA CGTTGTGAAC ATCAAGCCAA AAGGAGTAGT CGTAGTCACG
GATAAAACTC AGCTCAAAAT ACTCGAGAGA CCTGTTGATA CCGGAAAGAT ACCAAGGGTA
ACCTACGACG ATATAGGGGA CTTGGAGGAG GCTAAGCAGA AGATTAGGGA GATGGTTGAG
TTGCCGTTAA GGCACCCAGA GCTCTTCAAG CGCCTCGGTA TTGATCCTCC GAAGGGTATA
CTGCTCTACG GTCCTCCGGG TACCGGTAAG ACCCTCCTAG CAAAAGCCGT AGCAAACGAG
ACTGATGCTT ACTTCATAGC TATTAATGGC CCTGAGATTA TGAGTAAGTT CTACGGTGAG
AGCGAGCAGA GACTCAGAGA GATATTCGAA GAGGCTAAGG AGCACGCTCC TGCGATTATC
TTTATCGACG AGATAGACGC CATAGCCCCC AAGAGAGAAG AAGTCACAGG AGAAGTAGAA
AAAAGAGTAG TAGCACAGCT ACTAGCACTA ATGGACGGGC TTGAAGCTCG CGGAGACGTT
ATCGTTATCG GAGCTACCAA TAGGCCTAAC GCCTTGGACC CTGCGCTTAG AAGGCCCGGC
CGCTTTGACA GGGAGATCGA GATAGGCATC CCGGACAAGC GGGGAAGGCT CGAAATATTC
AAGGTTCACA CTAGGAGCAT GCCTCTAGCA AAGGACGTGG ACCTTGAAAA GCTCGCCGAG
ATAACCCACG GCTTCGTCGG GGCAGATATA GCAGCGCTGT GTAGAGAAGC CGCGATGAAA
GCCCTCCGGA GAGTACTGCC GAAGATAGAC TTGGAGAAGG ACGAGATCCC AGTAGAGGTG
CTTGAAACGA TAGAAGTCAC CATGGACGAC TTCATGAACG CATTCAGGGA AATAACTCCG
AGCGCCCTCA GGGAGATCGA GGTAGAAGTA CCGGCGGTGC ACTGGGACGA CATCGGAGGG
CTGGAAGACG TCAAACAACA ACTAAGAGAG GCTGTCGAGT GGCCCTTAAA GTACCCAGAG
TCGTTCAGCC GCCTCGGTAT TGATCCTCCG AAGGGTATAC TGCTCTACGG TCCTCCGGGT
ACCGGTAAGA CCCTCCTAGC AAAAGCCGTA GCGACAGAGA GTGAGGCGAA CTTTGTTAGC
ATAAAGGGTC CAGAGGTCTA CAGTAAGTGG GTTGGTGAAA GCGAGAGAGC CATACGAGAG
CTGTTCAGAA AGGCGAGGCA GGTTGCTCCG AGCATAATAT TCATAGACGA GATAGACGCC
CTCGCACCAA TGAGAGGGCT TGTAACTTCC GATTCGGGGG TCACAGAGCG CGTTGTCAGC
CAGCTTTTGA CTGAGATGGA TGGTTTGGAG AGGCTTGAGG GTGTTGTTGT TATTGCTGCT
ACTAATAGGC CTGACATTAT TGATCCTGCT TTGCTGAGGC CTGGCAGGTT TGATAGGTTG
ATCTACGTGC CTCCACCAGA CGAGAAGGCT AGACTCGAGA TACTCAAGGT TCACACTAGG
AGAATGCCTC TAGCCGAAGA CGTAGACCTA GCAGAAATAG CGAGAAAAAC AGAAGGATAC
ACAGGTGCAG ATATAGAAGT GCTGGTGCGC GAGGCAGGGC TTCTGGCATT AAGGGAGAAT
ATTTCGATAG ACAAGGTTTA CAGGAGACAC TTCGAGGAAG CGTTAAAGAA GGTAAGACCC
TCTCTTACCC CGGAGATAAT AAAGTTTTAC GAGTCGTGGA ACGAGAGAGC TAGAAAGGTT
TCAAAGCAGC AGCTAACAGT AACGGGTTTC TATGTATGA
|
|---|
| Protein sequence | MNNEGKVPEI ELKVLEVRQH EAGRGRVRID EDAMEALGIS AGDVVEIEGK RKTVAIAWPG
YAEDKGKGII RMDGWTRKNA GVSIGDKVKV RKAEVKPAQF IRLAPVSMTL AVDENFVAYV
KKRLVDRPII EGDVIQIPVL GQVIHFNVVN IKPKGVVVVT DKTQLKILER PVDTGKIPRV
TYDDIGDLEE AKQKIREMVE LPLRHPELFK RLGIDPPKGI LLYGPPGTGK TLLAKAVANE
TDAYFIAING PEIMSKFYGE SEQRLREIFE EAKEHAPAII FIDEIDAIAP KREEVTGEVE
KRVVAQLLAL MDGLEARGDV IVIGATNRPN ALDPALRRPG RFDREIEIGI PDKRGRLEIF
KVHTRSMPLA KDVDLEKLAE ITHGFVGADI AALCREAAMK ALRRVLPKID LEKDEIPVEV
LETIEVTMDD FMNAFREITP SALREIEVEV PAVHWDDIGG LEDVKQQLRE AVEWPLKYPE
SFSRLGIDPP KGILLYGPPG TGKTLLAKAV ATESEANFVS IKGPEVYSKW VGESERAIRE
LFRKARQVAP SIIFIDEIDA LAPMRGLVTS DSGVTERVVS QLLTEMDGLE RLEGVVVIAA
TNRPDIIDPA LLRPGRFDRL IYVPPPDEKA RLEILKVHTR RMPLAEDVDL AEIARKTEGY
TGADIEVLVR EAGLLALREN ISIDKVYRRH FEEALKKVRP SLTPEIIKFY ESWNERARKV
SKQQLTVTGF YV
|
|---|
| |