Gene Tpen_0236 details

Gene Information

• Locus tag: Tpen_0236
• Symbol: rps5p
• ID: 4600706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: -
• Start bp: 211531
• End bp: 212139
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 639772990
• Product: 30S ribosomal protein S5P
• Protein accession: YP_919649
• Protein GI: 119719154
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01020] ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type)

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGGTG AATGGCAGCC TCGAACGCTC CTGGGAAGGC TGGTGGTAGA GGGCAAGATA 
AAGAGCATAG ATGAGGTCTT CGCGAGAAAC ATGCCTATAC GCGAAGTGGA GATCATCGAC 
ACACTGCTAC CCGGATTGAA GTCTGAGGTT CTAAGCGTGG GCTTCGTGCA GAGGCAGACA 
GACTCGGGAG AAGTCTCACA GTACCAGGTT ACGGTCGCTG TTGGAAACGA GGACGGCTAC 
GTAGGAGTCG GAATGGGGAA GTCTAGGCAG ATAGGCATAG CCATCGAGAA AGCCACGAGA 
AGGGCAAAGC TGAACATTGT CCCCGTGAGG CGTGGTTGCG GGAGCTGGGA ATGTCTATGC 
GGAGAACCCC ACAGCATACC GTTCAAGGTG GAAGGCAAGG CCGGAAGCGT TAAAATCGAG 
CTTATACCTG CGCCTAAAGG AGTGGGCTTG GTAGCGAGCG ACGTAGCTAA AACGGTGCTA 
AGGCTTGCGG GCATAAAGGA CGTGTGGTCA AGGTCCTACG GCGAGACGAG GACAACGCAC 
AACATGGCTA AAGCCGTCTA CGAGGCGCTT AAGAAGACGT ACCAGTTTTA CTCCCCGGAT 
CAGTGGTGA 

 

Protein sequence

MSGEWQPRTL LGRLVVEGKI KSIDEVFARN MPIREVEIID TLLPGLKSEV LSVGFVQRQT 
DSGEVSQYQV TVAVGNEDGY VGVGMGKSRQ IGIAIEKATR RAKLNIVPVR RGCGSWECLC 
GEPHSIPFKV EGKAGSVKIE LIPAPKGVGL VASDVAKTVL RLAGIKDVWS RSYGETRTTH 
NMAKAVYEAL KKTYQFYSPD QW