Gene Tpen_0223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_0223 
Symbolrpl1P 
ID4601213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand- 
Start bp201683 
End bp202360 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content54% 
IMG OID639772977 
Product50S ribosomal protein L1P 
Protein accessionYP_919636 
Protein GI119719141 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0081] Ribosomal protein L1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.449707 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCAC AAACCCTGGT AGCCGCTGGG AGCCTAGAAG AGGCGATAAA GGAGGCCCTA 
GTCTCGTCAC CCAAGAAGAG GCGTTTCACG CAGAGCGTCG AGATGATAGT TACACTCAGG 
GACGTAGACG TTAAAAAGCC GGAGAACAGG CTGAACACTG TCGTGGCTCT GCCGCACCCG 
GCTCCTGGAA AACTGGCAAA GGTAGCCGTA ATTGCAAGCG GGGATACCGC GCTGAAAGCT 
AAGGAGGCAG GCGCGGATAT CGTAGTAGAC AAGGATGAGT TGCAGAAGAT AGGGAACGAC 
AAGAAAGCGG CGAAAAAGCT GGCCAAAAGG TACGACTTCT TCCTCGCACA ACCAGACCTC 
ATGCCGCTTG TAGGAAGAGT TCTAGGTAAG TACCTGGGTC CCCGCGGTAA AATGCCTCAA 
CCGATCCCTC CGAACGTAGC GCTAGACGCG CTGATAGAGA GATTCAGGAG GTCTGTGAGG 
ATTAGAATGA AGGACGAACC CCAAATAGCC TGCAGGATCG GGGTGGAAAC ACAGCCTGTC 
GAACATTTAG CTGAGAACGC GCGCGCAGTT CTGGCGGAGA TCTTGAAGAA GTTCCCTCCG 
CCGAACATAG ACAGGATATA CTTCAAGCTG ACGATGGGTA GACCGGTGAA GGTCAGCAGA 
GAGGTGGTTA GGAAGTGA
 
Protein sequence
MSSQTLVAAG SLEEAIKEAL VSSPKKRRFT QSVEMIVTLR DVDVKKPENR LNTVVALPHP 
APGKLAKVAV IASGDTALKA KEAGADIVVD KDELQKIGND KKAAKKLAKR YDFFLAQPDL 
MPLVGRVLGK YLGPRGKMPQ PIPPNVALDA LIERFRRSVR IRMKDEPQIA CRIGVETQPV 
EHLAENARAV LAEILKKFPP PNIDRIYFKL TMGRPVKVSR EVVRK