| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4936 |
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| Symbol | |
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| ID | 4595303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008697 |
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| Strand | + |
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| Start bp | 268640 |
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| End bp | 274582 |
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| Gene Length | 5943 bp |
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| Protein Length | 1980 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639772719 |
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| Product | DNA primase catalytic core |
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| Protein accession | YP_919379 |
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| Protein GI | 119714237 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core
[TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.471032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.076973 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGTGC ACAAGCTGAC CGCGGGAGAC GGGTACACGT ACCTGACCCG TCAGGTCGCC
GTGCACGATG CAACCGACCG GGGGCACGCG GGACTGGCCG ACTACTACGC CGAGAAGGGC
GAGTCGCCGG GCCGTTGGTT CGGCGCGGGG CTCGGTGCGC TCGACCTCGA GGTGGGCTCG
CAGGTCACCG AGACCCACAT GCGGAATCTG TTCGGCGAGG GTCGCCACCC GGACGCGGAG
CGGTTGGAGA ACGCCGTCCT GGACGCGGGG AAGAGCGTTG AGCAGGCCAA GAAGGCCTCT
CAGCTCGGCC GCGTGTTCGC CCGCTACCTG GGCAACCAGC CGGAGTTCAT CCAGGAGACC
GCCAAGCGCT ACATCGCCTA CAACCTGGCC CACGGGGAGC ACTGGAAGAC CCCGGTGCCG
GCCGAGGTGC GGGCGCAGAT CCGCACCGAA CTGGGCAACG AGCACTTCCT CCGCGAGCAC
GGCCGCGCCC CGATCGACGA CCGCGAGCGC GGCTCCTTCA TGGCCAAGGC CACCCGTCAG
CAGACCACCG CCGTGGCTGG CTACGACCTC ACCTTCGCTC CGGTGAAGTC CGTCTCGACG
CTGTGGGCAC TGGCCGACCG GGACGTCGCC AAGGAGATCG AGGCCGCCCA CCACTCGGCT
GTCGAGGCCA CCCTTTCGTG GCTGGAGAAG GAGGTGCTGT TCACGCGCCG CGGCCGCGGC
GGCCTCCAGC AGGTCAAGGC CAAGGGGCTG ATCGCGGGCA TGTTCACCCA CCGCGACGCA
CGCTCCTCCG ACCCTCACCT GCACACCCAC GTCGCTGTCA GCAACAAGGT CCAGGACGAG
ACCGGACGCT GGCTCGCCGT CGACGGACGG GTCCTGTTCA AGGCCAACGT CACCCTCGCG
GAGATGTACA ACACCCTCAT CGAGTCCGAG CTGATCGCCC GGCTGGGGGT TCGTTTCGAG
AACCGCCGCA GCGGTTTGGC CAAGGGTGTC GACAAGCGGC CCGTGCGCGA GATCGTCGGC
GTCGACGAGC GTCTTGCCAA GACCTGGTCC AAGCGGCACA GCGCCATCGA GGCCCGGCGC
CGCGAACTGG CAGCAGCCTT CCAGACCGAG CACGGGCGGC CGCCGACCGA AGGCGAGGCC
GTCACCCTCG CGGAGAAGGC CTGGGACCAG ACCCGGCAGG CCAAGCACGC ACCCCGCGCC
GAGGCCGACC AGCGCGCCGC CTGGCTGACC GAGGCCGCCG CCATTATCGG CAGCGAACAG
GCCGTCCGCG ACATGGTCGA GGGCTGCCTC GGACACCGTC CGGACTCCCA AGACGTCACT
GACGAGTGGG TCGCCGAGAC CGCGCAGGAT GTCGTCGAAC GGGTCGCCGA GGATCGCGCG
ACCTGGCAGG TCTGGCACCT GCACGCTGAA GCACAGCGCC AGGCCCGCGC CCACCGCGTC
CGGCTGCCCG ACCTCGACGC CGCCGTTGAC CGCGTCGTGG CCACCGCGAT CGCCGACCAC
TCGATCGCCT TCAACGCCCC CGACCCGCTC ACCCACGCCG CCACCGCGGC CGAGCAGGAC
GTGACGATCC CCGAGCCGTT GCAGCGCACC GAGCACGGGG TCAACGGCGA GGAGATCGTC
AGCGTCTACA GCCTCGCCGG CGCCCGCCAG TACACCTCCC AGGCCGTCAT CGACGCCGAG
CGGCGCATCG TCGAGTCCGC CCGCCGCACG GGAGGCCGCA CCATCAGCGA GGTCCGCGTC
GGCATCGCGA TCGCCGAAGC CGCCGCCAAC GAGCTCCAGC TCAACGCCGC CCAGCAGTCC
CTGGTCCGCG AGATGGCCAC CAGCGGCCGC GCCGTGCAGC TCGCGCTCGC GCCCGCCGGC
ACCGGCAAGA CCACCGCCAT GCAGGTCCTC ACTCGCGCCT GGCAGGACTC CGGCGGCACC
GTCATCGGCC TCGCACCTTC CGCAGTCGCA GCCCAGGAAC TCGGCGCCTC CATCAACCCC
GAGACCGGTG ACGCCGGCGT CGGTGCCGGG GGCAAGGCCA TGGGCCTGTT CCAGGGACCC
TGGCGCCCGG GTCGGAAGAA GGTCCGCGCC GACACCCTGG CCAAGCTCGT GTGGCACGCC
GAAAAGGGCG GAGCGCCCTC GTGGGTGGAG AGGATCAACC CCAAGACCCT CGTCCTGATC
GACGAGGCAG GCATGGCCGC CACCACCGAT CTGGCGGCCG CGATCGACTA CATCACCTCC
CGCGGAGGCC AGGTGCGGCT GGTCGGTGAC GACCGGCAGC TAGCCTCGGT CGCCGCCGGC
GGCGTCCTGC GCGACATCGC CCACCAGATC GGCGCCGTCA CCCTCAGCGA AGTGCACCGC
TTCCGCAACC GCGACGGCAG CCTCAACCAC GCCGAAGCGG CCGCCACTCT GGCCCTGCGT
GAAGGCGACC CGTCGGCGAT CGCGTTCTAC GCCGACCGTG GCCGCATCCA CGTCGGCGAC
CTCGGCGCCT GCGCCGACCA GGCCTACGCC GCGTGGGCCG CCGACCGAGC CGCCGACACC
GACTCAGTCC TCATCGCACC CACCCGCGCC CTCGTTGCCG AACTCAACAC CCGGGCCCGC
AACGACCGCC TCGCCGGCCT CGACGAGAAG GAGATCGGGC GCGTACTGAC GCTGGCCGAC
GGCTCGAGGG TCTCCGAAGG TGATCGGATC ATCACCCGCG AGAACGACCG TCGCCTGCGG
ATCAGCCGCA CCAACTGGGT CAAGAACGGC GACCGCTGGC ACGTCAAGAA GGTCAACGCC
GACGGCTCCC TGCGGGTGGT CCACGACCAG CTCGGCAAGA CCATCACCCT GCCCGCCGAC
TACGTCTCCA AGACGGTCCA GCTCGGCTAC GCGACCACCG TGCACGGCGC GCAGGGCATC
ACCACCGGCA CCTGTCACGT CGTCCTCACC GGTGACGAAG ACCGCAATCT GCTCTATGTC
GCGCTCTCCC GCGGCAAGTT CGCCAACCAC CTCTATCTCA ACGTCGCCAG CGACGGTGAC
CCGCACAACC TGATCCGGCC CGAGGCGCTG ATCCCGCCGA CCGCGCTCGA CCGGATCGCC
GAGATGCTGC GCCGCGACGG CTCGCCGGTC TCCGCGACGA CCACGCTGCG CGAGCAGACC
AACCCGCACC AGCTGCTCGG GGACATGGCC TCGCGTTACC ACGACGCGGT CACGGCCGGC
GCCGAGAACC TGATCGGCAC CACGGGCATG GACAAGATCG ACGCGCACGC CGAAGCACTC
CTGACCGGGC TGACCGAGGC CCCCGCGTGG CCGACGCTGC GCTCCCACCT CGCGCTCGTC
GCGCTCGACG AGCACAGCCC CTTGAAGCTG CTGACCGCAG CCGTGGGCGT CGGGTCGCTG
GCCGACGCGC GCGACCCCGC CGCGGTGCTC GATGCCCGGG TCGACGACCT GGTCGCCGAA
CTCACCGCCG CCCGGCCACA CGATCGGGAC ACTCCCCCGC CGGCCGACGG ACCGCTGCCC
TGGCTGCCCG GCATCCCCGC CCGGCTGGGC GAGGCCCATG ACTGGGGCCC GTTCGCGGCC
GCCTACCACC AGCTCGTGCG TGAGCAGATC GACGCCGTCC GCGAGCAGGC TCGGGGATGG
ACCGGCGCCA CCGCACCCGT GTGGGCACAA CCTTTCCTCG AGGACGAGGA CGCCGACCTG
CGGGCCGATC TCGCCGTGTG GCGGGCAGTG GCCGGGACCG ACGAGAACGA CCTGCGCCCC
ACCGGCGACC GCAACATCGG CGCCCCCGGC GCCTACCAGG CCAAGCTCAA CCGGGCCGTA
CGCGCGGCAC GTCCGAGCTA CCCCTTCTCC CAGCGCACCT GGTACCAGGT GCTGCCCGAG
GTCGTCCGCC AAGACCCGTG GATCACGCCG CTGTGCCAGC GGCTCGCCCG GCTCGAGCGC
GCAGGGCTGC CCGTAACCGA CTACATCAAG GAAGCGCTCG CCACCGATCC CTCCCTGGCC
GGCGGCCAGT CCGGCACCGA CACCGACGCA CCGCAGAGCG CGGAGGTCGA CCCGCGGCCG
CTGCCTGACG AACAGCAGGC CGCCGCCCTG TGGTGGCGCC TCGTTCCGCA CCTCGGGCCG
GCTGCACTCG GCGCCGACGA GCACTCCGCG AACCTGCTGC AACCCGCATG GCGGACCGCA
CTGGCCGAAC TCGTCGGCAC GACCAAGGCC GACTACCTCC AAAAGTCACC CGCCTGGCCC
GCGCTCGTCG CCGCGGTCGA CGAAGCCTGC GAGCACCACG GCTGGACCCC GGCCGAGATC
CTCTCCAGGG CACTGGCCGG CGTCCCCCAA GACGGGTCTC TCACCGGCGT CGAAGTCGCC
GACGCGCTCG TGCTCCGCAT CGCCATGCTC ACCGACCAGC CGTCGGAAGC GCCGCCGCCC
AGTGACGACG AGGCACCGTA CCCCGAGGCC GACGTCCCCG CGGACCCCGA CCTGCTCCCA
CCCGAGGACG CAGACGAGTT CATGGCCGCC TTCTACCGGG ACCAGCCAGA CGACAACAGC
GCCCCTGTCT TCCACTCCCC CGCCCCGGGT GAGTACGACG CTCTCGCAAC CGAGCCTGTC
GACCGGGAAC CGCCACCGGA CGAGCACGAC CCGACGTACG ACGACGTCGC GATCGGCGAC
TACCCGTACG TGGAGGACCC GTACGCGACG ACCCTGCCCT GGGAACAGGC CGAGGAGGTC
ACCGCCGAGA ACGCCTTCCC CGACCCGAAC CAGATCCCGG CCGAGCGGAT CCACGAGCTC
AACCAGCAGG CCCTGGCCTA CTTCGAGTCC TGCTACCCGC GCTCGTGGGC GCCGGACTAC
CTGCGCGAGC GGATGGGGAC CGACCTCACC GACCAGCCCA ACTACGCCCT CGGATACGCA
CCCGGCGGCG GTCGCAGCCT GATGCGCCAC CTCACCGACC AGGGCGCCAC CCTCGACGAA
CTCACACAGG CCGGCCTTGT CTCACAGCGT GAACGCGACG ACGGCACGAC GTACTGCCGC
GACTTCTTCC GCGACCGACT GGTCTTGCCC ATCCGCGATC CCCACGACCC CACGAGCGAG
GCCATCCTCG GCTTCGTCGG CCGCCGCAAC CCCACCAAGA CCGACGACGA CTTCGCCGGA
CCGAAGTACC TGAACACCCG CAACACCAGC ATCTTCACCA AGGGCGAGGC ACTCTTCGGG
TACGCCGAAG CCCGCGAACT CCTCGCCAAC GGCGCGCTCC CGGTCATCGT CGAAGGCCCC
ATGGACGCAC TGGCCATCAC CCTGGGCAGC AACGGCGCCG CCGTCGGCCT CGCCCCGATG
GGAACCGCGC TCACCATCAA CCAGATCAAG CTGCTGCGCG CCAACATCGA GATGGTCAAC
GGCCGCGACC GCATCGCCGT GGCCACCGAC TCCGACCCCG CCGGGTGGAA GTCGGCGCAA
AAGGCCTTCT GGCACCTGAC GGCCGCGGAC CTCGACCCCA CTCAGCTCGA ACTACCCGAC
GGCCTGGACC CGGCCAAGCT GTTCGAGACC GAGGGTGCCG ACGCGATCGC CGCCGCCATC
GAGAACCGGT CCCCACTCGG CGACGCAATG ATCGACCACC TGCTGCGCAC CGCCGGCCAC
TGGTCAGAGA CCGACGTCCG CCAGAAGCTC ATCCACCAGG CCGCGCGCAT CCTCGGCTCC
CGAGGCTCCG AGAGCTGGCT AGACGGCTTC GAGCGCCTGC GCCACAAGCT GCACCTCGCG
CCCGGCATCC TCGAGCACCA GACCGTCACC GAGAGCATGG AGCGCGACCG CAACCGCCCC
GCTTACGCCC AGGCTCGAAT CGATGAGATC AACGCCGAAG AGCGCAAAAG GACGGCCAAG
GCCGATCCTC AGTCCCGCCG CCGGGCAGCC GAGCAGCGGC TCGCAGCGGC AACCACCACG
CCCCGCCGAC CCGGCCTCGA CGTGCCGCCA ACAGGTCCCG ATCACGCGGG TCCTGCCCGG
TGA
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| Protein sequence | MGVHKLTAGD GYTYLTRQVA VHDATDRGHA GLADYYAEKG ESPGRWFGAG LGALDLEVGS
QVTETHMRNL FGEGRHPDAE RLENAVLDAG KSVEQAKKAS QLGRVFARYL GNQPEFIQET
AKRYIAYNLA HGEHWKTPVP AEVRAQIRTE LGNEHFLREH GRAPIDDRER GSFMAKATRQ
QTTAVAGYDL TFAPVKSVST LWALADRDVA KEIEAAHHSA VEATLSWLEK EVLFTRRGRG
GLQQVKAKGL IAGMFTHRDA RSSDPHLHTH VAVSNKVQDE TGRWLAVDGR VLFKANVTLA
EMYNTLIESE LIARLGVRFE NRRSGLAKGV DKRPVREIVG VDERLAKTWS KRHSAIEARR
RELAAAFQTE HGRPPTEGEA VTLAEKAWDQ TRQAKHAPRA EADQRAAWLT EAAAIIGSEQ
AVRDMVEGCL GHRPDSQDVT DEWVAETAQD VVERVAEDRA TWQVWHLHAE AQRQARAHRV
RLPDLDAAVD RVVATAIADH SIAFNAPDPL THAATAAEQD VTIPEPLQRT EHGVNGEEIV
SVYSLAGARQ YTSQAVIDAE RRIVESARRT GGRTISEVRV GIAIAEAAAN ELQLNAAQQS
LVREMATSGR AVQLALAPAG TGKTTAMQVL TRAWQDSGGT VIGLAPSAVA AQELGASINP
ETGDAGVGAG GKAMGLFQGP WRPGRKKVRA DTLAKLVWHA EKGGAPSWVE RINPKTLVLI
DEAGMAATTD LAAAIDYITS RGGQVRLVGD DRQLASVAAG GVLRDIAHQI GAVTLSEVHR
FRNRDGSLNH AEAAATLALR EGDPSAIAFY ADRGRIHVGD LGACADQAYA AWAADRAADT
DSVLIAPTRA LVAELNTRAR NDRLAGLDEK EIGRVLTLAD GSRVSEGDRI ITRENDRRLR
ISRTNWVKNG DRWHVKKVNA DGSLRVVHDQ LGKTITLPAD YVSKTVQLGY ATTVHGAQGI
TTGTCHVVLT GDEDRNLLYV ALSRGKFANH LYLNVASDGD PHNLIRPEAL IPPTALDRIA
EMLRRDGSPV SATTTLREQT NPHQLLGDMA SRYHDAVTAG AENLIGTTGM DKIDAHAEAL
LTGLTEAPAW PTLRSHLALV ALDEHSPLKL LTAAVGVGSL ADARDPAAVL DARVDDLVAE
LTAARPHDRD TPPPADGPLP WLPGIPARLG EAHDWGPFAA AYHQLVREQI DAVREQARGW
TGATAPVWAQ PFLEDEDADL RADLAVWRAV AGTDENDLRP TGDRNIGAPG AYQAKLNRAV
RAARPSYPFS QRTWYQVLPE VVRQDPWITP LCQRLARLER AGLPVTDYIK EALATDPSLA
GGQSGTDTDA PQSAEVDPRP LPDEQQAAAL WWRLVPHLGP AALGADEHSA NLLQPAWRTA
LAELVGTTKA DYLQKSPAWP ALVAAVDEAC EHHGWTPAEI LSRALAGVPQ DGSLTGVEVA
DALVLRIAML TDQPSEAPPP SDDEAPYPEA DVPADPDLLP PEDADEFMAA FYRDQPDDNS
APVFHSPAPG EYDALATEPV DREPPPDEHD PTYDDVAIGD YPYVEDPYAT TLPWEQAEEV
TAENAFPDPN QIPAERIHEL NQQALAYFES CYPRSWAPDY LRERMGTDLT DQPNYALGYA
PGGGRSLMRH LTDQGATLDE LTQAGLVSQR ERDDGTTYCR DFFRDRLVLP IRDPHDPTSE
AILGFVGRRN PTKTDDDFAG PKYLNTRNTS IFTKGEALFG YAEARELLAN GALPVIVEGP
MDALAITLGS NGAAVGLAPM GTALTINQIK LLRANIEMVN GRDRIAVATD SDPAGWKSAQ
KAFWHLTAAD LDPTQLELPD GLDPAKLFET EGADAIAAAI ENRSPLGDAM IDHLLRTAGH
WSETDVRQKL IHQAARILGS RGSESWLDGF ERLRHKLHLA PGILEHQTVT ESMERDRNRP
AYAQARIDEI NAEERKRTAK ADPQSRRRAA EQRLAAATTT PRRPGLDVPP TGPDHAGPAR
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