| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4772 |
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| Symbol | |
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| ID | 4595374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008697 |
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| Strand | - |
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| Start bp | 80099 |
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| End bp | 85324 |
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| Gene Length | 5226 bp |
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| Protein Length | 1741 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639772561 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_919221 |
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| Protein GI | 119714079 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.232543 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTCT TCAAGGTCCA CGAGCAGGTG ATCGCGGACT ACCGCGCCTT CACCTCTGGC
TTCGTGGAGG TCCGCGACAG CCGGATCAAG AAGTACGTGG ACGACCAGTT CGAGCAGGGC
GTGCAGTGGC CGGATCCCTG GCTGAGCCTC AACCCGTCGT TCGCCTCCGG TGGCGCCGTT
CCGTACCTGG TCGCGAAGGG TCTCCTTCAC CCGGAGGCGG CCCGGATCTT CCGACGCAAG
GAGAACCTGC AGGACGCCGG CCGCGACCCG ATCGTGCTCC ACCAGCACCA ACGCGAGGCT
GTCGAGGTCG CCCGGACGGG CAAGAGCTAC GTGCTCACCA CCGGGACGGG GTCCGGAAAG
TCGCTCGCCT ACATCGTTCC CGTCGTTGAC GCCGTCTTGC GGGACCGGGA TGCCCGTGGA
GGCGAGCGAC GGCCCGGCGT CAAGGCCATC GTCGTCTATC CAATGAACGC CTTGGCGAAC
TCCCAGGTGA ACGAGCTGAG GAAGTTTCTG AGCTTCGGCT ATCCGGAGGG CGGTGAGCCC
GTCACCTTTG CCCGGTACAC CGGACAAGAG TCTCAAGACG AGCGGATCAG GATCCTTGCG
GAGCCACCCG ACATCCTCCT GACCAACTAC GTCATGCTCG AACTGGTGCT CACCCGCCCA
GACGAGCGCA AGCGCCTGGT CCGCGCCGCC CAGGGCCTGC GGTTTCTCGC TCTCGATGAG
CTGCACACGT ACCGCGGCAG ACAGGGCGCC GATGTGGCGA TGCTGATCCG CCGGCTGCGT
GACCAGTGCG CCAGCGACGA CCTACAGATC GTCGGCACGA GCGCCACCAT GGCCAGCGGC
GGTACGCAGG CCGAGCGCAG CGAAGTGGTC GCCAGGGTCG CGACGCGACT CTTCGGTGCC
GAGGTCACCC CGGACCGCGT CATCGGCGAG ACCCTGGTCC GCGCTACCCC CGACGTGACC
GCCAGCGACC CGGAGCTCGC CAACGCAGTC ACGGACAACG CCACCCAGCA GGCCAGATCG
TTCGCCGACT TCACGGCCGA CCCGCTGGCC AGCTGGGTGG AAACCACCTT CGGCCTCATG
TTGGAGGAGG GCACCGACCG GCTTGTGCGC CGCACGCCGA CCACCATCCC CGAGGCCGCC
GAGCAACTGG CGAGTCGCAC TGGCAGGCCG GTCGAGTCGT GCGCAGTCGC GCTGCGCAAC
GTTCTACGCG AAGGCTCCTC CGTTAGACAG CCCGACACCG GCCGTCCGGT CTTCGCCTTT
CGTCTCCACC AGTTCCTCTC CAAGGGCGAC ACGGTCTACG TCTCGCTGGA ACCCGAGGAC
ACACGGCACA TCACCGGCAC CTACCAGGTC AGCGTCCCGG ACCACCCACA GAAGGCGCTC
CTCCCTTTGG GGTTCTGCCG TGAGTGCGGC CAGGAATACC TCGTCGTCGC CAAGGTCGGG
CGCGATGGCG GGTCGGCGTT CGTCTCCCGA CGCGATGTTG ACGCCAGCGG CGGCGATAGC
GTCACCGGCT ACCTGTACGT CAGCAGCGAC CTGCCGTGGC CCGAGGACCC GCTGGCGGCT
GGACGGCTGC CCGAGTCCTG GCTCGTCACC GACCCGAACA CCGACCGTGT CGAGATCCTC
GACAGCAAAC GCAAGTACCT CCCCACCAAG GTCTTTGTGA GCCCCACCGG CAGCATCGAT
GAGACTCGAG CCGGTCTGCC CGCCTGGTTC GTCTCGACAC CCTTTGCCTT CTGCATGCGC
TGCGGCGTCT CGTACGAGCA GGTACGCGGC AACGACTTCG GCAAGCTCGC GACTCTCGAC
GCCGAGGGCC GGTCGAGCGC CATGACGCTG CTGAGCGCAT CCATCGTCCG CAGCCTGCGC
GGTGTCCCCG AGACCGAGCT CCCCCCGTCA GCGCGGAAGC TCCTGACCTT CGTCGACAAC
CGGCAGGACG CCAGCCTCCA GGCCGGCCAC TTCAACGACT TCGTCCAGGT CGCCCAGCTC
CGCGCCGCCC TCTACGCTGC TCTCCAGGCT GCTGGCGCTG ACGGACTGAC CCACGAGGCG
TTGGCCGACG CCGTCACCGA CGCCTTGGGT CTGACGATGC GCGACTTCGC ACAGAGCCCG
GACGCCAAGT TCGGTGCCCG CAAGGACGCC GAACGAGCCC TGCGGTCCGT GGTCGAGTAC
CAGCTCTACG TCGACCTGCA GCGAGGATGG CGGGTCACCA TGCCCAACCT CGAGCAGACC
GGTCTGGTCA AGGTCGCCTA CCGCGACCTG CCCGAGCTCG CCGCCGATGA GGATTCGTGG
GCCGGCACCT ACCTGCTCAA CAAGATCAGC GCCGCGCAAC GCGAGGAGCT CGGACGGATC
CTCCTCGACG AGCTACGTCG GGTGCGCGCC ATCGAGGTCG ACTGCCTGAC CGAGGAAGGG
TTCGACCGCC TCAGGCGCCT CGCCCGATCC CACCTGATCG AGCCCTGGAC CCTCGGCGAG
GACGAACGCG TCGTCGAGGC CGGAGTCGCC ATCCCTCGCC CCGCGCGCGC GGGCGGGCGT
CGAGCGCTGC TCGCCGTCTC CGGACGGGGC GCCTTCGGCA AATACCTGCG CCGCGACGCC
GCCGGGCTGC CGGGAGAGGT CCGGACCGAA GACTCCGAGC GAGTCATCCA GGACCTCTTC
CGCGTACTCA CCGACGCGGG TCTCCTGAGC CGAACCGAGA GCGCCGACGG ACCCGAGTAC
CGGATCAACG CCGGCGCGTT GCGATGGGTC CCCGGCGACG GCGCCACCGG CGCTTCCGAC
CCCCTGCGCA AGGCCTTCAG CGGCGAAGAG ACTGCGCGGG TCAACCCGTT CTTCTGCGAG
CTGTACCGCG ACCTTGCCCG CGGATACGCC GGCATGCTGG CTCGCGAGCA CACCGCACAG
GTGCCACAAA GCGACCGCCT CGAGCGAGAG GAGGACTTCC GCACCGGCGA CCTCCCCCTG
CTCTACTGCT CGCCGACCAT GGAGCTCGGA GTCGACATCT CCGACCTCAA CGCCGTGGGG
CTACGCAACG TCCCACCCAC ACCGGCCAAC TACGCCCAGC GGTCCGGACG GGCTGGTCGC
AATGGCCAAC AGGCCCTGGT CCTGACGTAC TGCTCCACCG GCAACGCACA CGACAACTAC
TGGTTCCGCC GGTCCCGAGA GATGGTCTCC GGGTCGGTCA TCGCCCCGCG CCTCGACCTG
ACCAACGAGG ACCTCATCCG CTCCCACGTG CACGCCATCT GGCTGGCCGA GACCGACGAG
TCGATGAAGT CCTCCATCAC CGACCTCGTC GAGGCCGGGG GAGACACCCC GAGCCTGACG
CTGCTCCCAC AGCTGTGGGA CGCGGTCAAC AAGCCCAACG TCACACGTCA CGCGCAGCAG
ACCGCCGAGC GCGTCCTGGC CGAACTTCGG CACACCTGGG CCCTCGACGG CGGTGACCCC
TCCTGGTGGT CCGACACCTG GGTCCACGAC CAGGTCAAGC ACGCAGCCGC GTCCCTCGAC
GACGCCCTCC AGCGATGGCG GGAGCTGTAC CGCACCGCGC TTGCCGAGTA CCACGAGCAG
CACCGACTCG CGATCAGCAC CAACGCCAGC AAGTGGGACC GCCGCCAGGC CGAACGCCGA
CGCGCCGACG CCCGCAACCA GCTCACCCTG CTGCGCAACG ACGACCGGGA AGCCGGCGCA
ACCGACTTCT ACTCCTACCG CTACCTGGCC AGCGAAGGCT TCCTGCCCGG CTACTCGTTC
CCCCGGTTGC CCCTCGCCGC CTACATCCCC GCACGTCGCG GCAGAAAGGT CGACGGCGAC
TTCCTGCAGC GCCCACGGTT CGTCGCCATC AGCGAGTTCG GCCCCAACAG CCTCATCTAC
CACGAGGGTG CCCGCTACGA GGTCACGCGC GTGCAAATGC CACGCGACCC CGGTAACACC
ACCGGCGGGG GAGCGGTTAC CGAGACCGCC AAGCGATGCG AGGGATGCGG CTACCACCAC
CCGGTCCGAG TCGGGCTCGA CCGATGCGAG AACTGCCAGC ACCCGCTCGG CGCCACCCAG
TACGGCCTCC TGCGCCTGCA GACCGTGTTC ACCCGCCGCC GCGAGCGGAT CAGCAGCGAC
GAAGAGGAAC GCCGGAAGAG CGGCTTCGAG CTCGAGGTCT CCCTGCGCTT CGCCGACCGC
GGCGGCCGCC CCAACTGCAC CCGCGCCACG GCATCAGCCG GCAACGACCC GGTCCTTGAG
ATGAGCCACG CCGAGGCTGC CGAGATCCGG ATCGCAAACG TCGGTCGACG ACGCCGGAAG
AACCCCCAAG ACCGCGGATT CTGGCTCGAC CTGCGCGAGG GCAACTGGCT CAGCGACAAG
CAGGCGGCCG ACTCACCTGT CGACACCGAG GGCCTGGTGA GTGCCGAGGA CGTCAAAGAG
AAGGAGAAGG TCACCCCCTA CGTCGAGGAC CGCCGCAACC TGCTGGTGCT CCGCCTGACC
CGGTCGGTGG AGGACCAAGT GGCGGTCACC CTGCGCGCCG CGCTCGAGCG CGCCATCGAG
GCCGAGTTCC AGCTCGAGGA CTCCGAGCTC GACAGCCGCG AGCTGCCGGA CCTCGACGGT
CGCGGCCGGA TGCTCCTCAC CGAGGCCGCC GAGGGCGGCG CAGGCGTGCT CGGCCGGCTT
GTCGACGAGC CCGATGCACT GGCCCGGGTT GCGCGCCGAG CGCTCACGAT CGTGCACTAC
AACCCCGACA CGGGTGACGA CCTCGAGAAG GCCCCAGGAG CGCGCGAACG CTGCGAACGC
GGGTGCTACG ACTGCCTGCT GTCCTACGCC AACCAGTACG AGCACAGCCG CATCGACCGC
CACGCCGTCG TCCCGCTGCT GCGGCAGCTC CTGAAGGTCC AGGTGGCCGG CGGCGCCGGC
GGCCGAGACC GAGACGACCA GCGAGACTGG CTCCACAAGC TGCGCGACTC CGAGCTGGAG
AGGAAGTTCG TCGACTGGCT CAGCGACACC GGACGACGCC TGCCCGACGA CGCACAACGC
ACCATCGAGG CGGCCCAAGC CCGTCCGGAC TTCGTCTACG ACCTGCCCGG CAACCCCGTC
GCTGTCTTCG TCGATGGACC CCACCACGAC GACGCCGTCC GGCAGCAACG CGACGAGCAG
GCCGCCGAGC GGCTCGAGAA CCTCGGGTGG ACCGTCGTCC GGATCCGGCA CGATGACGAC
TGGACCACCA CCGCCGACCG CTACCAGTGG CTCTTCGGCC CTGCAAGGAG CACCGCATCC
ACATGA
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| Protein sequence | MDVFKVHEQV IADYRAFTSG FVEVRDSRIK KYVDDQFEQG VQWPDPWLSL NPSFASGGAV
PYLVAKGLLH PEAARIFRRK ENLQDAGRDP IVLHQHQREA VEVARTGKSY VLTTGTGSGK
SLAYIVPVVD AVLRDRDARG GERRPGVKAI VVYPMNALAN SQVNELRKFL SFGYPEGGEP
VTFARYTGQE SQDERIRILA EPPDILLTNY VMLELVLTRP DERKRLVRAA QGLRFLALDE
LHTYRGRQGA DVAMLIRRLR DQCASDDLQI VGTSATMASG GTQAERSEVV ARVATRLFGA
EVTPDRVIGE TLVRATPDVT ASDPELANAV TDNATQQARS FADFTADPLA SWVETTFGLM
LEEGTDRLVR RTPTTIPEAA EQLASRTGRP VESCAVALRN VLREGSSVRQ PDTGRPVFAF
RLHQFLSKGD TVYVSLEPED TRHITGTYQV SVPDHPQKAL LPLGFCRECG QEYLVVAKVG
RDGGSAFVSR RDVDASGGDS VTGYLYVSSD LPWPEDPLAA GRLPESWLVT DPNTDRVEIL
DSKRKYLPTK VFVSPTGSID ETRAGLPAWF VSTPFAFCMR CGVSYEQVRG NDFGKLATLD
AEGRSSAMTL LSASIVRSLR GVPETELPPS ARKLLTFVDN RQDASLQAGH FNDFVQVAQL
RAALYAALQA AGADGLTHEA LADAVTDALG LTMRDFAQSP DAKFGARKDA ERALRSVVEY
QLYVDLQRGW RVTMPNLEQT GLVKVAYRDL PELAADEDSW AGTYLLNKIS AAQREELGRI
LLDELRRVRA IEVDCLTEEG FDRLRRLARS HLIEPWTLGE DERVVEAGVA IPRPARAGGR
RALLAVSGRG AFGKYLRRDA AGLPGEVRTE DSERVIQDLF RVLTDAGLLS RTESADGPEY
RINAGALRWV PGDGATGASD PLRKAFSGEE TARVNPFFCE LYRDLARGYA GMLAREHTAQ
VPQSDRLERE EDFRTGDLPL LYCSPTMELG VDISDLNAVG LRNVPPTPAN YAQRSGRAGR
NGQQALVLTY CSTGNAHDNY WFRRSREMVS GSVIAPRLDL TNEDLIRSHV HAIWLAETDE
SMKSSITDLV EAGGDTPSLT LLPQLWDAVN KPNVTRHAQQ TAERVLAELR HTWALDGGDP
SWWSDTWVHD QVKHAAASLD DALQRWRELY RTALAEYHEQ HRLAISTNAS KWDRRQAERR
RADARNQLTL LRNDDREAGA TDFYSYRYLA SEGFLPGYSF PRLPLAAYIP ARRGRKVDGD
FLQRPRFVAI SEFGPNSLIY HEGARYEVTR VQMPRDPGNT TGGGAVTETA KRCEGCGYHH
PVRVGLDRCE NCQHPLGATQ YGLLRLQTVF TRRRERISSD EEERRKSGFE LEVSLRFADR
GGRPNCTRAT ASAGNDPVLE MSHAEAAEIR IANVGRRRRK NPQDRGFWLD LREGNWLSDK
QAADSPVDTE GLVSAEDVKE KEKVTPYVED RRNLLVLRLT RSVEDQVAVT LRAALERAIE
AEFQLEDSEL DSRELPDLDG RGRMLLTEAA EGGAGVLGRL VDEPDALARV ARRALTIVHY
NPDTGDDLEK APGARERCER GCYDCLLSYA NQYEHSRIDR HAVVPLLRQL LKVQVAGGAG
GRDRDDQRDW LHKLRDSELE RKFVDWLSDT GRRLPDDAQR TIEAAQARPD FVYDLPGNPV
AVFVDGPHHD DAVRQQRDEQ AAERLENLGW TVVRIRHDDD WTTTADRYQW LFGPARSTAS
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