| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4729 |
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| Symbol | |
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| ID | 4595479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008697 |
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| Strand | - |
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| Start bp | 28529 |
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| End bp | 30028 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639772518 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_919178 |
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| Protein GI | 119714036 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.103918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCA ACAACGGAGC CAGCTCGAAT GGCCGTCGCG CGCACCTGAA CGGGATGCAC
CTGAAGCAGC TCGTGCCGGT CGACCAGGTA CTGGTCAAGC GTCTCCAGTC CCGCGTGGGT
GCTCGCCGCG GGAAGGCGCT GGAGGAGTTC CGCCGCAACA GCCAGCCGAT CCCCAAGGGC
GAGGACGCCC GGCAGCACAC CGAAGCCCTG CTGGCCTCGG TGCTGGCCGA GTACGAGTCC
GACCTGGTCG AGGACGGCCA CAACCCGCTG GAGGAAGACG CCCGGGACCG GCTGGAGGCC
GCGCTCAAGG CCCAGTTGTT CGGCGCAGGC AACCTCGATC AGCTGCTGGA GGATCCCGAG
GCCGAGGACA TCGTCATCAA CAGTTGGCAG AACGTGTTCG TCACCTACGC CGACGGCACC
AAGGCGCAGA TGCCGCCGGT CGCCTCCTCG GACAAGGAGC TGGAGGAGAT CGTCAAGACG
ATTTCTGCCC ACGACGGCCT GTCCACCCGT GCCTTCGATC TGATCAACTA CAACGTCACC
CTCAGGCTGC ACGACGGCTC ACGTCTGCAC GCGGTCCAGG GGGTGAGCGC GAACGGTCTG
TCGATCTCGA TCCGCAAGCA CCGCCACAAG AGGGCCACCC TGCTTCCGGT TCCCGGGCTG
GCCGAGCGGG AGCGCGCCGC CGGGGTTCCG GAGTCGCTGC GCACCAAGGA CCTGCTGAGC
GAGGGAACCG TCGACCACGA CCTCGCCGCG TTCCTGTCCG CGCTGGTGAA GTCGCGTCAG
AACATCATGA TCGCCGGAGC CGTAAGTGCG GGGAAGACCA CGCTTGTGCG AGCGCTGGCC
TCCGAAATAG ACCCGATCGA GCGTCTGGTC ACCGTGGAGC GGTCCATCGA GCTCGGCCTG
CACGAGGACC CCGAGCGCCA CCCCGACATC GTGCCGCTCG AGGAGCGGCT GGCGAACGTC
GAAGGAGAAG GCGCAGTCGG GTTGGCCGAC CTGGTGCGCA ACTCGCTGCG GATGAACCCC
TCGCGGGTGA TCGTGGGCGA GGTCTTGGGT GATGAGGTCA TCACGATGCT CAACGCCATG
GCCCAGGGCA ACGACGGGTC GCTGAGCACG ATCCACGCGA ACTCCTCGCG CGATGTCATC
GGGAAGATCC AGACCTACGC TCTGCAGGCT CAGGAGCGGT TGCCGTTCGA GGCCACCAAC
GGCCTGATCG CGAACGCACT GAACTTCATC GTGTTCCTTC GCCGGATCCG CACCGAGGAC
GGCCGTCAGC GCCGGATCGT CGAGTCGATC CGTGAGGTTG CCGGACGTGA TGAGGACGGC
GTGAAGACGA CCGAGCTGTG GAAGTACAAC AGGGCCACCG GTCGCACCGA GTTCACCCGG
AAGGCGATCA TCCGCGAGGA AGCCCTCCTC GATGTCGGCT GGGACCCCGA CGGCACGACG
GACCTGAACA GGTTCGCCGA GCCGAGCGGT GCCAACGGCG ATGAGGGGTG GCAGATCTGA
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| Protein sequence | MNSNNGASSN GRRAHLNGMH LKQLVPVDQV LVKRLQSRVG ARRGKALEEF RRNSQPIPKG
EDARQHTEAL LASVLAEYES DLVEDGHNPL EEDARDRLEA ALKAQLFGAG NLDQLLEDPE
AEDIVINSWQ NVFVTYADGT KAQMPPVASS DKELEEIVKT ISAHDGLSTR AFDLINYNVT
LRLHDGSRLH AVQGVSANGL SISIRKHRHK RATLLPVPGL AERERAAGVP ESLRTKDLLS
EGTVDHDLAA FLSALVKSRQ NIMIAGAVSA GKTTLVRALA SEIDPIERLV TVERSIELGL
HEDPERHPDI VPLEERLANV EGEGAVGLAD LVRNSLRMNP SRVIVGEVLG DEVITMLNAM
AQGNDGSLST IHANSSRDVI GKIQTYALQA QERLPFEATN GLIANALNFI VFLRRIRTED
GRQRRIVESI REVAGRDEDG VKTTELWKYN RATGRTEFTR KAIIREEALL DVGWDPDGTT
DLNRFAEPSG ANGDEGWQI
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