Gene Noca_4725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_4725 
Symbol 
ID4595360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008697 
Strand
Start bp24370 
End bp25497 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content68% 
IMG OID639772514 
Productphage integrase family protein 
Protein accessionYP_919174 
Protein GI119714032 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value0.675287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTCTTA CGGTGGTCCG GTCGCTGGAC TCCGCGCGCA GCCTGCGTGG CAGCGTCGAC 
GTCGAGGAGT TCGAGCAGGA GCTGATCGAC CAGTACTCGC TCGCGCTCGG CGCGGTGGGG
ATCAACGACA AGACCGCTGC GGCGGATCGT TCGGTGGTCT TCGAGTTCGC GCACTTCCTG
GGTCGGCCGT TGTGGACCGC GCAGGTCGAG GACGCCGACC GGTACCTGCG GACGGCACGG
CGAGAGCGCG GTCTGGCGAG GTCGACGGTG GCGGGCAAGG CCGCGTCGTT GGCGAAGTTC
TACGAGTTCG TCATCGTGCG TTACCAAGGC GACATCCACG CCCTGTTCGA CCAGGTCATG
GTCCAGCCGA TCGATGAGTT CAACCGGCCG CGAGCGATTG CGGCCGCCAC CTCGGGCAGG
ATCCCGCCAC GGGCCGACGA GGTGCGTGAC CTCTTCGAAG GCTGGCGCGA CTCCCTGCCC
GAGGCACGCA AGTACCTGCC GGCTGCCCGG GACTACCTCG CGGCCTCGCT GTGGCGACGG
ATCGGGCTGC GGATCAACGA GACTGTGATG CTCGACGTCG GCGACTGGCA TCCCGAGCTC
GGCACCCACG GCAAGCTGCA TGTGCGCCAT GGCAAGGGCA GCCGCGGTCG TGGCGCGAAG
GTCCGCATCG TACCGGCCAT CGACGAGGTC GATGCGTTGC TGGAGTGGTG GCTGACCGAC
GTGCGACCAC AGTTCGGCGA CGACTACGAG GACCCCAACG CTCCGCTTCT TCCCAGCGAA
CGACGCGATC CGATGACGGG ACATTGCACG CGCATCGGTG CCGAGGCGCT GCGCACCGGT
ATGGGCGAGG CCGTCGGCCG GTGGCTGCCC GGGTGGACGG GCCGGCTGTC GCCGCATGTG
CTGCGGCACT ACTGTGCCTC GCATCTGTAT GAGCAGGGCA TGACGCTCAA GGCGATCCAG
GAGCTTTTGG GCCACGGCTG GTTGTCGACC ACGACGCAGT ACATCCACGT CCGCTCCACC
CACATCGAGA CGTCCTGGGC AGTCGCCACC GAGCGGACCC TGGCACGCCT TGGCAGCACG
GTCAGCACAA CGAGCGAGCG ACCGACGAGC GAGAAGGAGG AGGTTTGA
 
Protein sequence
MTLTVVRSLD SARSLRGSVD VEEFEQELID QYSLALGAVG INDKTAAADR SVVFEFAHFL 
GRPLWTAQVE DADRYLRTAR RERGLARSTV AGKAASLAKF YEFVIVRYQG DIHALFDQVM
VQPIDEFNRP RAIAAATSGR IPPRADEVRD LFEGWRDSLP EARKYLPAAR DYLAASLWRR
IGLRINETVM LDVGDWHPEL GTHGKLHVRH GKGSRGRGAK VRIVPAIDEV DALLEWWLTD
VRPQFGDDYE DPNAPLLPSE RRDPMTGHCT RIGAEALRTG MGEAVGRWLP GWTGRLSPHV
LRHYCASHLY EQGMTLKAIQ ELLGHGWLST TTQYIHVRST HIETSWAVAT ERTLARLGST
VSTTSERPTS EKEEV