Gene Tpen_1875 details

Gene Information

• Locus tag: Tpen_1875
• ID: 4600333
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008696
• Strand: -
• Start bp: 20180
• End bp: 22081
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 639772473
• Product: DEAD/DEAH box helicase domain-containing protein
• Protein accession: YP_919133
• Protein GI: 119709793
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1061] DNA or RNA helicases of superfamily II

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAGAGA AAAAGGCGTG GGGGGCTATA GGAAAAGAAG TTAGCCCCGA CTCTAATCCT 
CTAAGCGCCT ACAATAGCGA GGTAGAGCGA TTGCGCCTAG CCATAAGGCG TAACCGCGAT 
TTAGCCCCTA GCCTTGAATT CGAAATAGCT AGGGCTATAG CCTCGCGCTT AGCCCTTATA 
AGGGCTAAAG GGCTAGACAC ACAGGAAATC GTCAACGACA TATGCGACGC CGTAGATTCT 
AGTCTTTCGC TAGGCGAGAA TTTGGCTATC GTCGAAAAAA TCCTCGCTAA ATGGCTAGGC 
GGGGCTTATT ATTCTGATAA TAATAGCCCC GAGGAAGTCG AAGCGCAGTA CAATTCATGG 
CTTGAGAGCC GCCTCGCGGT GTTAGCCGAC AAGGTAGAGC TAGGCGAGGC TAGCCCCGAG 
GAAATCGAGG AAGCTAAGCA AATCCTAGCC CAGAATCCTC GCCTAAAAGA CAAATACGCA 
GAGCTAGCCC AAAAGCTAGG CGTAGAGCAG TACGTAGACT GGAGACAAAT CCTAGCCCCA 
CAAGCCATAA GCGAGCTAGA GCTAACCGAG GAAGAAGCCA GCACCCAGAT AATCCTAGGC 
GTGGACACGT CGATATGGGG CTATGAACTG CTAGCCGACC TAGCAGGCGA CGAGGAAAGG 
CTCAAAGAAC TTTTAAGGGA GCAGGGGCTA ACCGAGAGAG ACTACACGGC TAGAGTTTTA 
AGCGAGCGCA TTAGGAAAAT ACGCGTGGCT AAAATTGTCG TGCCGAAGAA AATGCGCGAC 
TACCAGAGGA TAGCGCTTAG ATGGCTACTC AGCGCGCACG GCGCCGTGCA AATCCCCACA 
GGCGGCGGAA AGACGCTTAT CGGTAGCACG CTAGCCGTGA ACCTAGCGCT ATGGGGCTAT 
GACACGGCTA TTATCGTGCC CACGCAAGTG CTGGCTGAGC AGTGGGCTAG CCACTTTGAG 
AGGGAGTGGA GGCTCAGAGT GAACGTGAAG TACGGGGGAG TGAACAGGCG AGGACAAGGG 
CTAGGCGAGC TAATCACGGT AATGGTCTAC AACACTTTCG TGAGCGAGGT TAAGCGGGGC 
TACACGCCTT TCGCAGTGAT AGTTGACGAA AGCCATCATG CAGGGGCTAG GGAGCTAGCG 
AGGACTCTGG CGAGGCTGGC TAGGCTAGGC GTGCACATCT ATGGCTTTAG CGCGACGCAC 
AAGCGCGAGG ACACAGAAGA GCAGTGGGTG CTTGACATGC TACTACCTAA GCGCTATGAG 
GTAAGCCCGA GCGAGCTACA GGAGCAAGGC TACATGGTGC CAATCGAGCT AGTGGGGATA 
AGAGTGACGG AGACACAGGA GTTCTACCAG CAGTACGAGG AGATACAGGA GAAGATTAGG 
CGCCTAAGCA GGCGCATAGA GGACGGGGAG AAACACTTGA AGAAGGACTT GATGAAGCTG 
GTAAACTTAA GGAAACAGCT AGCCGCGAGG AGCCCTGTTA AGTGGAGCTC GGCGCTAGCG 
CTTATCAACA GGCTAGCACA GGAGCACAAC AGAGTACTAG TGTGGACTGA GAGCCAAGAC 
GTGGCGTTAA AGCTAGCCCA GACACTCGGA GGAAAAGCGA TACTCAGCAA GACGCCTAAG 
ACCGAGCGCG CGAGGATACT CAAAGAGTGG GGCTCAACCT TCAGAGTACT AGTGACGTGC 
AGAGTGCTAG ACGAGGGAGT AGACGTACCC GAGGTAAGCG TAGGCGTAAT GCTAGCGAGC 
GGTACGACTG ACAGACAGCT CATACAGAGA GCAGGGAGGC TATTGAGACC GGCGCCTGGA 
AAGACGAAAG CCACGCTGTT CTACGTCTAC GTGGCTTACA CGCACGAGGA GACGGCGTTT 
CACAAGCTAA AGGCGATATT CGCGAGGAGG GGATTGCAGT GA 

 

Protein sequence

MREKKAWGAI GKEVSPDSNP LSAYNSEVER LRLAIRRNRD LAPSLEFEIA RAIASRLALI 
RAKGLDTQEI VNDICDAVDS SLSLGENLAI VEKILAKWLG GAYYSDNNSP EEVEAQYNSW 
LESRLAVLAD KVELGEASPE EIEEAKQILA QNPRLKDKYA ELAQKLGVEQ YVDWRQILAP 
QAISELELTE EEASTQIILG VDTSIWGYEL LADLAGDEER LKELLREQGL TERDYTARVL 
SERIRKIRVA KIVVPKKMRD YQRIALRWLL SAHGAVQIPT GGGKTLIGST LAVNLALWGY 
DTAIIVPTQV LAEQWASHFE REWRLRVNVK YGGVNRRGQG LGELITVMVY NTFVSEVKRG 
YTPFAVIVDE SHHAGARELA RTLARLARLG VHIYGFSATH KREDTEEQWV LDMLLPKRYE 
VSPSELQEQG YMVPIELVGI RVTETQEFYQ QYEEIQEKIR RLSRRIEDGE KHLKKDLMKL 
VNLRKQLAAR SPVKWSSALA LINRLAQEHN RVLVWTESQD VALKLAQTLG GKAILSKTPK 
TERARILKEW GSTFRVLVTC RVLDEGVDVP EVSVGVMLAS GTTDRQLIQR AGRLLRPAPG 
KTKATLFYVY VAYTHEETAF HKLKAIFARR GLQ