Gene Pden_5108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_5108 
Symbol 
ID4583669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp621925 
End bp623127 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content65% 
IMG OID639772411 
Productubiquinol oxidase, subunit II 
Protein accessionYP_918864 
Protein GI119387830 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 
TIGRFAM ID[TIGR01433] cytochrome o ubiquinol oxidase subunit II 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTACA TACGAAAATT CGCCCGCCTG CCCTGGCTTG CCTTGCTGAT TCCCCTTGCC 
GCCTGCAAGG CCGAGGTCCT GGCGCCCGCC GGGGACGTGG CGGCGCGACA GCGCGACCTC
CTGGTGATCT CGACGCTGCT GATGCTGCTG ATCATCGTGC CGGTGATGGT GCTGACGGTG
GTTTTTGCCC GCCGCTACCG CGAGAGGAAC AAGGACGCCG ACTACCGGCC GGACTGGGAC
CACTCGACCA AGCTGGAATT CGTGATCTGG GGGGCACCGC TTCTCATCAT CATCACGCTG
GGCGCGCTGA CCTGGGTGGG CACGCATCTG CTGGACCCCT ATCGGCCGCT GGACCGCATC
AGCGCCGACC GGCCGCTGAC CGAAGAGCAC AGGCCCTTGC CGGTGCAGGT GGTGGCGATG
GACTGGAAAT GGCTGTTCAT CTATCCCGAG CAGGGCATCG CCTCGGTCAA CGAGATGGCC
GTGCCGGTGG ATCGCCCGGT CGAGTTCACG CTGACCTCGA CCTCGGTGAT GAACGCCTTC
TACATTCCCG CGATGGCCGG CATGATCTAT GCCATGCCGG GGATGGAGAC CAAGCTGAAC
GGCGTCTTCA ACCATCCCGG CGAATACAAG GGCATCGCCT CGCATTATTC GGGCCACGGC
TTTTCGGGGA TGCATTTCAA GGCCCATGCC ACCGACGAGG CAGGCTTCGA CGCCTGGATC
GAAAAGGCCC GCGCCTCGGG CGGCACGCTG GACCGCCCGC GCTATCTGGA GCTGGAGGCA
CCCAGCGAGA ACGTGCCGCC GATGTCCTTT GCCGAGGTCG ATCCGCATCT GTTCCAGCGC
ATCGTGAACA TGTGCGTGGA GCCGGGCAAG ATCTGCATGG CCGAGATGAT GGCGCTGGAC
GCGCAGGGCG GCACCGGGCT TGCCGGCACC ATGAACATGA CCCGGTTGAC CTATGACAAG
GACCAGCGCC GCGGCACCCG CGCGCCGGTG CTGGGATGGG AGCCCTTCCA GGTCGCCTCG
TTCTGCACGC CCGAGGATTC GGCGCTGATG TTCGGCAAAT CGCCCGAACT GGCGCGCGCG
CCGGTGGACA TGACGCCGAT GCGCGGCCAC GCGTTGACCC CTCCGAAAGG GCCCTTCACC
CCCTCGCAAG ACAATGCCGT CACCTTGCTC GATCCGGCTG CGGATCGGGC GCGGAACTTC
TGA
 
Protein sequence
MTYIRKFARL PWLALLIPLA ACKAEVLAPA GDVAARQRDL LVISTLLMLL IIVPVMVLTV 
VFARRYRERN KDADYRPDWD HSTKLEFVIW GAPLLIIITL GALTWVGTHL LDPYRPLDRI
SADRPLTEEH RPLPVQVVAM DWKWLFIYPE QGIASVNEMA VPVDRPVEFT LTSTSVMNAF
YIPAMAGMIY AMPGMETKLN GVFNHPGEYK GIASHYSGHG FSGMHFKAHA TDEAGFDAWI
EKARASGGTL DRPRYLELEA PSENVPPMSF AEVDPHLFQR IVNMCVEPGK ICMAEMMALD
AQGGTGLAGT MNMTRLTYDK DQRRGTRAPV LGWEPFQVAS FCTPEDSALM FGKSPELARA
PVDMTPMRGH ALTPPKGPFT PSQDNAVTLL DPAADRARNF