Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_5072 |
Symbol | |
ID | 4583633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008688 |
Strand | + |
Start bp | 584405 |
End bp | 585964 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639772375 |
Product | extracellular solute-binding protein |
Protein accession | YP_918828 |
Protein GI | 119387794 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.236333 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.758542 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTCA ATCCGACGGG GCAGGGGCTG ACCAGGCGGG GCTTGCTGGC CGGCGCGGCA GGCATGGCGG CGGCGGGGCT GATCCTGCCG CGCGGCGCGC GCGCGCAGGA GGCGCGGCGC GGCGGCAGGC TGCGCATCGG CCATCTGGGC GGCGCGACCT CGGACACGCT GGACCCGGCG ACCTATGCCG CGGGGCCGGT GGTGACGGCG ATGCTGGCGG TCTGCAACAA CCTGGTCGAG ATCGACGCCA AGGGCCAGGC CGTGCCCGAA CTGGCCGAGT TCGAGCCCGA TGCCGAGGCC CGCGTCTGGA CCTTCCGCCT GAAGGACGGC GTCACCTTCT CGGACGGGCG CAAGCTCACG GCCAGGGACG TGATCGCGTC CTTCGACCAT CATCGCGGCG CCGATACCAA GTCCGGCGCC AAGGGCTCGC TTGAGCAGGT CAAGGAAATC CGCGCCGATG GCGACAATGT CGTGGTCTTC GAACTGACCT CGGGCAATGC CGATTTCGCC TATCTGACCT CGGACTATCA CTTCGTCATC ATGCCGGCGA ACGAGGACGG CACGCTGGAC TGGCAGTCGG GTCTGGGCAC CGGCGGCTAT GTGCTGGAGA ACTTCGAGCC GGGCGTGCGC ATCACGCTCA AGCGCCGCGA CGACTACTGG AAGCCCGACC GCGCCTGGTT CGACGAGGCG GTGCTGCTGA CCATCAACGA TGCCACCGCC CGGCAGAATG CGCTGATGAC CGGCGAGGTC GATGTCATCA ACTCGCCCGA CCTGGCTACC CTGCACCTGT TGCAGCGCCG GCCGGGCCTG CAACTGGTCG AGGTGACGGG GACCGCGCAT TACACCATGC CGATGTTCTG CGACCAGGCG CCCTTTACCG ATCCGAACCT GCGGTTGGCG CTGAAATACG CCATCGACCG GCAGGAGGTG CTGGACAAGG TGCTGCGCGG CCATGGCCAG ATCGCCAATG ACAGTCCCAT CGCGCCGGCG AACCGCTTCT TTGCCGCCGA CCTGCCGCAG CGGGCCTATG ACCCGGACAA GGCGAAGCAT TACCTGAAAC AGGCCGGCAT GGAGGGGCTG AAGGTCGAGA TTTCCGCCTC GGACGCGGCG TCGGTCGGGG CGCTGGACAT GGTGCAGCTG TTCCAGCAAT CGGCCAAGGC CGCTGGAATC GACCTGACCG TCAAGCGCGA GCCGGACGAC GGCTATTGGT CGAATGTCTG GCTGAAGAAG CCCTTTTGCG TCAGCTACTG GAACGGCCGC CCGACCGAGG ACGACATGTT CAGCCTGGTC TATGCCCGGG GCGCCGAGTG GAACGAAAGC CACTGGGACA ACGAGCGATT CAACGAACTG CTGCTGAAGG CGCGGGCCGA GCTGGACGAA GGCCTGCGCG CCGAGATGTA TCGCGAGATG CAGGGGCTGG TTTCCGAGGA CGGCGGCACC ATCATCCCGA TTTTCGTGAA CTATATCGAC GTGGCCAATG ACAAGGTGGC GCATGGCGAG GTGGCGTCGA ACCGCTTCCT CGACGGCTGG AAGATCGTGG AACGGTGGTG GCAGGCATGA
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Protein sequence | MSFNPTGQGL TRRGLLAGAA GMAAAGLILP RGARAQEARR GGRLRIGHLG GATSDTLDPA TYAAGPVVTA MLAVCNNLVE IDAKGQAVPE LAEFEPDAEA RVWTFRLKDG VTFSDGRKLT ARDVIASFDH HRGADTKSGA KGSLEQVKEI RADGDNVVVF ELTSGNADFA YLTSDYHFVI MPANEDGTLD WQSGLGTGGY VLENFEPGVR ITLKRRDDYW KPDRAWFDEA VLLTINDATA RQNALMTGEV DVINSPDLAT LHLLQRRPGL QLVEVTGTAH YTMPMFCDQA PFTDPNLRLA LKYAIDRQEV LDKVLRGHGQ IANDSPIAPA NRFFAADLPQ RAYDPDKAKH YLKQAGMEGL KVEISASDAA SVGALDMVQL FQQSAKAAGI DLTVKREPDD GYWSNVWLKK PFCVSYWNGR PTEDDMFSLV YARGAEWNES HWDNERFNEL LLKARAELDE GLRAEMYREM QGLVSEDGGT IIPIFVNYID VANDKVAHGE VASNRFLDGW KIVERWWQA
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