Gene Pden_5004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_5004 
Symbol 
ID4583565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp514961 
End bp515698 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content71% 
IMG OID639772307 
ProductABC transporter related 
Protein accessionYP_918760 
Protein GI119387726 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.472634 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCC AACTTCACCG GAGCCTGAAA ACACCCGCGG CCGTCGCGGT GCGGGGGCTC 
AGCCGCGCCT TCGGCCCGCG CCGGGTGATC GACAACCTGG ACCTTGCCAT CCGGCCGGGC
GAATTCGTCG CGCTGCTGGG CGCCTCGGGC TGCGGCAAGT CCACGCTGCT GCGCATCCTG
GGCGATCTGG ACCCGGAGTT CGAGGGCGAG GTGGTGGTGC CTTCGCGCCG CGCCATCGCC
TTCCAGGCGC CGCGGCTGAT GCCGTGGAAG CGGGTCTGGC ACAATGTCGT CCTGGGCTTG
CCGGGCCGCC CCGACCGAAA ACGGGCCGAG CGCGCGCTGG ACGAGGTCGG CATCGGTCAT
CGCGCCGATG TCTGGCCCAA GGTGCTGTCG GGCGGCGAGG CACAGCGCGC CGCCCTGGCG
CGGGCGCTGG TGCGGGAACC CGACCTGCTT TTGCTGGACG AACCCTTCGC CGCGCTGGAT
GCGCTGACCC GGATCAAGGC GCAGGCCCTG GTGGCCGAAT TGTGGCAGCG CCACGGCTGC
GCGATCCTGC TGGTCACTCA CGACGTCGAA GAGGCGATCC TGCTGGCCGA TCGGGTGCTG
GTGATGAAAG AGGGCGTAAT CGCCCATCAC GAACCCATCG CGCTGGACCG GCCGCGCGAC
GTGGCCGACC CCGAATTCGC CCGTATCCGC GGGGCGTTGC TGGACTGGCT GGGCGTGGCG
CACGGGGCCG CGCATTGA
 
Protein sequence
MATQLHRSLK TPAAVAVRGL SRAFGPRRVI DNLDLAIRPG EFVALLGASG CGKSTLLRIL 
GDLDPEFEGE VVVPSRRAIA FQAPRLMPWK RVWHNVVLGL PGRPDRKRAE RALDEVGIGH
RADVWPKVLS GGEAQRAALA RALVREPDLL LLDEPFAALD ALTRIKAQAL VAELWQRHGC
AILLVTHDVE EAILLADRVL VMKEGVIAHH EPIALDRPRD VADPEFARIR GALLDWLGVA
HGAAH