Gene Pden_5001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_5001 
Symbol 
ID4583562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp513391 
End bp513969 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content70% 
IMG OID639772304 
ProductHupE/UreJ protein 
Protein accessionYP_918757 
Protein GI119387723 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2370] Hydrogenase/urease accessory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.66529 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTG CGCTTACCCT GTTTCTGCTT CTCAGCCCGG CTGTGGCCCT TGCGCATCCC 
GGGCATCTGC ATGGCGGCGG CTTCGCCTCC GGTTTCTCGC ATCCCCTTCT GGGCCTGGAT
CACGTCGTCG CCATGGTCGC CGTGGGTCTT TGGGCCGCCT CATTGGGAGG GGCCGCCGCG
CCGATCCTCC TCCTGGCCTT TCCGCTGGCG ATGATGGCGG GCGGATTGCT GGGCGCGGCG
GACGTCCCCC TTCCCGCTGT CGAGGCGGGG ATCGCCGCCT CGTCCATCGT GATCGGGGTC
GCCGTCATGC TGGCCCTGCG TCCGCCGCTA TGGGCGGCTG GCCTGGTCGT TGCGGCCTTT
GCCGTTTTCC ACGGCCATGC GCACGGCACC GAGATGCCTG CCGCCGGCAA TCTCGCGCCT
TATGCGGCGG GGTTCGTGCT GGCGACGCTT CTGCTGCATC TGGCGGGTCT TGGCATCGGC
AGGGTGGGGC GCCTGCATCC GGGGCCGATG CTGTCGCGTG GGCTGGGCGC GGTCATCGCG
CTCGTCGGGT CGTTCGCGCT TGGCGGGCTG GCCGGATGA
 
Protein sequence
MRIALTLFLL LSPAVALAHP GHLHGGGFAS GFSHPLLGLD HVVAMVAVGL WAASLGGAAA 
PILLLAFPLA MMAGGLLGAA DVPLPAVEAG IAASSIVIGV AVMLALRPPL WAAGLVVAAF
AVFHGHAHGT EMPAAGNLAP YAAGFVLATL LLHLAGLGIG RVGRLHPGPM LSRGLGAVIA
LVGSFALGGL AG