| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4969 |
|---|
| Symbol | |
|---|
| ID | 4583530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | - |
|---|
| Start bp | 476532 |
|---|
| End bp | 477980 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639772272 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_918725 |
|---|
| Protein GI | 119387691 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.506966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.048465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAT TGAAGGACAA GGATCTGCTT CGCCAGCAGG CGCTGATCGG CGGCAATTGG
GTCGATGCGG CCAGCGGCGC CGTGGTCCAG GTCACCGACC CCGCGACCGG GCAGGTCATG
GGCACCATTC CCGACCTGTC GGCCGCCGAG ACCCGCGCGG CCATCGATGC CGCCGATGCC
GCCTTCGCCT CGTGGAAAAA GCGCAGCCAT GCCGAGCGCG CGGCGCTGCT GGAACGCTGG
TTCGACCTGA TGAACCAGCA TGCCGAGGAT CTGGCGCTGA TCCTGACGCT GGAACAGGGC
AAGCCGCTTT CCGAGGCACG GGGGGAAATC GCCTATGGCG CCTCTTTCGT GAAATGGTTC
GCCGAGGAGG CGCGGCGCAT CGACGGCACC GTGATCCCGG CGCCGACGAA CGACCGCCGT
ATCCTGACGC TGAAGGAGCC GGTCGGCGTC TCGGCCATCA TCACGCCGTG GAACTTCCCG
AACGCGATGA TCACCCGCAA GGTCGGCCCG GCCCTGGCGG CGGGCTGCAC CGTGGTCATC
AAGCCTTCCG AGTTCACGCC TTATTCCGCG CTCGCCCTGG GCGTTCTGGC CGAGCGCGCG
GGGATTCCGG CGGGCGTCGT CAACATCGTC ACCGGGATGC CGGCCGAGAT CGGCGCGGAA
CTGACCGCCA ACCCGACGGT GCGCAAGGTC AGCTTTACCG GCTCGACCCG CGTCGGCTCG
CTTCTGATGG CGCAATCCGC GCCGACGGTA AAGCGGCTGT CGCTGGAACT GGGCGGCAAC
GCGCCCTTCA TCGTCTTCGA CGATGCCGAT CTGGACGCGG CGGTCGAGGG GGCGATCGCG
TCCAAGTTCC GCAATGGCGG CCAGACCTGC GTCTGCTCGA ACCGGATCCT GGTGCAGGCG
GGCGTCTACG ACGCCTTTGC CGAAAAGCTG GGCGCCAAGG TCGCGGCGAT GAAGGTCGGT
CCCGGCACGC AGGCCGGCAA CGACATCGGC CCGATGATCA ACCGCGCTGC GCTGGACAAG
ATCGCGCGCC ATGTCGCGGA TGCCGTGGCG AAAGGCGCGA CCGTTGCCGC CCGGGCCGAG
ATCCCCGAGG GGCAATATGC CGCCCCCGTG GTCCTGACGG GTGCCACGAC CGAGATGGAG
CTGGCATCCG AGGAAACCTT CGGCCCCGTC GCGCCGCTTT TCCGCTTTGA GACCGAGGAC
GAGGCCGTCG CCATCGCGAA CGGCACCCCC TTCGGCCTTG CCGCCTATTT CTATACCGAG
AATATCCGCC GTGCCTGGCG CGTGGCCGAG GCGCTGGAAT TCGGCATGGT GGGGCTGAAC
ACCGGCGCGG TCTCGACCAC CGTTTCGCCT TTTGGCGGCG TCAAGTCCTC GGGCCTGGGC
CGCGAGGGCG CGCGGGCGGG GATCGAGGAA TATCTGGAGG TGAAGGCCTT CCACATGGGC
GGGCTCTGA
|
|---|
| Protein sequence | MTALKDKDLL RQQALIGGNW VDAASGAVVQ VTDPATGQVM GTIPDLSAAE TRAAIDAADA
AFASWKKRSH AERAALLERW FDLMNQHAED LALILTLEQG KPLSEARGEI AYGASFVKWF
AEEARRIDGT VIPAPTNDRR ILTLKEPVGV SAIITPWNFP NAMITRKVGP ALAAGCTVVI
KPSEFTPYSA LALGVLAERA GIPAGVVNIV TGMPAEIGAE LTANPTVRKV SFTGSTRVGS
LLMAQSAPTV KRLSLELGGN APFIVFDDAD LDAAVEGAIA SKFRNGGQTC VCSNRILVQA
GVYDAFAEKL GAKVAAMKVG PGTQAGNDIG PMINRAALDK IARHVADAVA KGATVAARAE
IPEGQYAAPV VLTGATTEME LASEETFGPV APLFRFETED EAVAIANGTP FGLAAYFYTE
NIRRAWRVAE ALEFGMVGLN TGAVSTTVSP FGGVKSSGLG REGARAGIEE YLEVKAFHMG
GL
|
|---|
| |