| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4968 |
|---|
| Symbol | |
|---|
| ID | 4583529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | - |
|---|
| Start bp | 475722 |
|---|
| End bp | 476426 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639772271 |
|---|
| Product | haloacid dehalogenase, type II |
|---|
| Protein accession | YP_918724 |
|---|
| Protein GI | 119387690 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.834572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.042093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCGC GCTGGCGCCG CAGACAGGGA ACCCGGACCA TGACCTTCCG CCCAAAATTC
ATCACCTTCG ACTGCTACGG CACGCTGACC AATTTCGACA TGGCCGGGGC GGCCCGCCGC
ATCTATGCCG AGCAGCTCTC CGAGTCGGCG ATGGCGAAGT TCATCAGGAA CTTCGCCGCC
TATCGCCTGG ACGAGATCCT GGGCGCGTGG AAACCCTATG CCGAGGTGGT CCACAATTCG
CTGGAACGCA CCTGCAAGCG CAACGGCGTC ACCTTCCGCG ACGAGGACGC GCTGCGCATC
TATAACGAGG TGCCGACCTG GGGTCCGCAT TTCGACGTCC CCGAGGGGCT GGCCAAGGTC
GCCCGGGAAA TCCCGCTGGT GATCCTGTCC AACGCCATGA AAAGCCAGAT CATGTCCAAC
GTGGAAAAGT TGGGCGCGCC CTTCCATCTG GTCCTGACCG CCGAGGAGAC CGGCACCTAC
AAGCCGCAGA TGAACGGCTT CGAATGCATG CTGGACGCGC TGGGCTGCGG ACCCGAGGAC
ATCACCCATG TTTCGTCCTC GTTCCGCTAC GACCTGATGA CGGCCCATGA CCTGGGCATC
AAGTCCAAGG TCTGGGTCAA TCGCGGCCAC GAGCCCGCCA ACCCCTATTA CGAATATACC
GAGATCGCGG ATATCCGCGG CCTGCCGGGC GTGTTCGGTC TGTGA
|
|---|
| Protein sequence | MAPRWRRRQG TRTMTFRPKF ITFDCYGTLT NFDMAGAARR IYAEQLSESA MAKFIRNFAA
YRLDEILGAW KPYAEVVHNS LERTCKRNGV TFRDEDALRI YNEVPTWGPH FDVPEGLAKV
AREIPLVILS NAMKSQIMSN VEKLGAPFHL VLTAEETGTY KPQMNGFECM LDALGCGPED
ITHVSSSFRY DLMTAHDLGI KSKVWVNRGH EPANPYYEYT EIADIRGLPG VFGL
|
|---|
| |