Gene Pden_4960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4960 
Symbol 
ID4583521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp467210 
End bp468163 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content65% 
IMG OID639772263 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_918716 
Protein GI119387682 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.138111 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0574372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCAC AGGTCGTCTC ACTGGTGCTG GGCCGCCTCG GCGTCGCCGT CATCACGCTT 
GTCATCGTGA GCTTCATCGT TTTCGCCGCG ACCGAGATGT TGCCCGGCGA CATCGCGCAG
ATCCTGCTGG GGCAGGCGGC GACCCCCGAG GCCGTCGCCG GCCTGCGCGA GGCCATGCAT
CTGAACGATC CCGCCATCCT GCGCTTCCTG CGCTGGCTGG GCGGGCTGCT GCAAGGCGAT
CTGGGCAAGT CCTATGCCAA CAACATGCCC GTGGCCGACC TGATCGGCGG CCGGCTGGCC
AATACGCTGA AGCTGGCGGC GGTGACCTCG ATGTTCGCGG TTCCGGTGGC GTTGTTCCTG
GGCATCACCA CGGCGATGTA TCGCGGCAGC CTCTACGACC GGGCGGTGAA CACGCTGGTC
GTCGGCGTCA TCTCGGTGCC CGAGTTCATG ATCGCCACCC TGGCGGTGCT GGTCTTCGCG
GTCTGGCTGC ACTGGCTGCC CGCCCTGTCC TTCACCGGCG ACACCACCAC GCTGATGGGC
CTGCTGAAGG CCTATGCCAT GCCGGTCATC ACGCTGAGCT TCGTGATCTC GGCCCAGATG
ATCCGCATGA CCCGCGCCGC CGTGGTCGAG ACGCTGAAGA TGCCCTATGC CGAGATGACG
CTGCTGAAGG GCGCCTCGAA GCCGCGCATC GTGCTGCGCC ATGCGCTGCC CAACGCCATC
GGTCCCATCG TGAACGCGGT CGCGCTGTCG CTGTCCTATC TGCTGGGGGG CGTCATCATC
GTCGAGACCG TGTTCAACTA TCCCGGCATC GCCAAGCTGA TGGTCGATGC GGTCTCCACT
CGCGACCTGC CGCTGATCCA GACCTGCGCG ATGATCTTCT GCCTTGGCTA CCTGATCCTC
ATCACCATCG CCGATGTCAT CGCCATCGTC TCGAACCCGA GGTTGCGCAA GTAA
 
Protein sequence
MNPQVVSLVL GRLGVAVITL VIVSFIVFAA TEMLPGDIAQ ILLGQAATPE AVAGLREAMH 
LNDPAILRFL RWLGGLLQGD LGKSYANNMP VADLIGGRLA NTLKLAAVTS MFAVPVALFL
GITTAMYRGS LYDRAVNTLV VGVISVPEFM IATLAVLVFA VWLHWLPALS FTGDTTTLMG
LLKAYAMPVI TLSFVISAQM IRMTRAAVVE TLKMPYAEMT LLKGASKPRI VLRHALPNAI
GPIVNAVALS LSYLLGGVII VETVFNYPGI AKLMVDAVST RDLPLIQTCA MIFCLGYLIL
ITIADVIAIV SNPRLRK