| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4956 |
|---|
| Symbol | |
|---|
| ID | 4583517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | - |
|---|
| Start bp | 462656 |
|---|
| End bp | 463975 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639772259 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_918712 |
|---|
| Protein GI | 119387678 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.579279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.246978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCGC CATTGCTGCA TATCCGAACC CCTGACAGCC TGCCCCCGGA AGCCGACGCG
GTCGTCATCG GCGGCGGGAT CGTCGGCACC TGCACCGCCT ATTATCTGGC CCGTCGCGGC
GTCCGGGTGG CGCTGGTCGA AAAGGGCTGG ATCGGGGCCG AGCAGTCCAG CCGCAACTGG
GGCTGGTGCC GCCAGCAGAA CCGCGATGCG CGCGAATTGC CGATGGCGAC GAAAAGCCTG
GACCTGTGGG ACGCGCTGGC CGCCGATATC GGCGAAAGCG TGGGGTTCCG CCGCTGCGGG
CTGCTGTATC TTTCCGACGA CGAGGCCGAG ATCGCGGGCT GGGCGCGCTG GCGCGATTTC
GCGCGCGGGC AAGGGGTCGT GACCCATATG CTGACGCCCG CCGAGGCCGC CGGGCGCGGC
CGCGCCACGG GCAAGGCGTG GAAGGGCGGC GTGTTCTCGC CCAGCGACGG CATCGCCGAC
CCGGAACGCG CGGCCCCCGT CATCGCGCGC GGGGTCGAGA AATTCGGCGG CTCGGTCCAT
CAGTCCTGCG CCGCGCGCGG GCTGGAGCTC GAGGCAGGCC GGGTCGCGGG CGTCGTCACC
GAAAAGGGCG TGATCCGCAC CCGGATCGTG ATCCTGGCCG GCGGGGCCTG GGCCTCGTCC
TTCTGCCGGC AATACGGGGT GGCGTTCCCG CAAGCGGCGG TGCGGTCCTC GATCCTTGCC
GTGGGGCCGG GGGTCGAGGG GCCGGACGCG CTGCATACCG CCCGCGTCTC GGTCACCCGG
CGGGGCGATG GCGGCTATAC GCTGGCGGTC TCGGGCTATG CGCGCGTCGA TCCGACGCGG
CAGCAATTGC GCTTTGCCAG GCATTTCCTG CCGATGTTCG CCCGGCGCTG GCGCGTGCTG
CGTCCGGGCG GGGCAGAGGG CTGGCGCTCG GGCCACGAGA CGCTGGCCCG CTGGCGGCTG
GACCGCCCGA CCCCGATGGA GCGGATGCGT ATCCTGGACC CCAGGCCCGA CGCCGCGATG
ATCCGCGAGA CGCTGGCCCG TGCCCGCGTG CTGCTGCCGG GGCTTGCGGA TATTCCGGTG
ACGGCGCAAT GGGCGGGCTA TATCGATTCG ACCCCCGACG GTGTTCCGGC CATCGGCGAA
ACCGAGGTGC CGGGCCTGAT TCTGGCCGCG GGCTTCAGCG GCCACGGTTT CGGCATCGGT
CCCGGTGCGG GCCATATGAT CGCCGATATG GTGACCGGCG CCACGCCCAT CCTTGATCCC
GCGCCCTACC ACCCCTCGCG CTTCCGGCAG GGAAGCTGGG GCAAGGTTTC GGATTTCTGA
|
|---|
| Protein sequence | MPAPLLHIRT PDSLPPEADA VVIGGGIVGT CTAYYLARRG VRVALVEKGW IGAEQSSRNW
GWCRQQNRDA RELPMATKSL DLWDALAADI GESVGFRRCG LLYLSDDEAE IAGWARWRDF
ARGQGVVTHM LTPAEAAGRG RATGKAWKGG VFSPSDGIAD PERAAPVIAR GVEKFGGSVH
QSCAARGLEL EAGRVAGVVT EKGVIRTRIV ILAGGAWASS FCRQYGVAFP QAAVRSSILA
VGPGVEGPDA LHTARVSVTR RGDGGYTLAV SGYARVDPTR QQLRFARHFL PMFARRWRVL
RPGGAEGWRS GHETLARWRL DRPTPMERMR ILDPRPDAAM IRETLARARV LLPGLADIPV
TAQWAGYIDS TPDGVPAIGE TEVPGLILAA GFSGHGFGIG PGAGHMIADM VTGATPILDP
APYHPSRFRQ GSWGKVSDF
|
|---|
| |