| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4924 |
|---|
| Symbol | |
|---|
| ID | 4583485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 430779 |
|---|
| End bp | 431534 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639772227 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_918680 |
|---|
| Protein GI | 119387646 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.69133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGTCC GCACAGCCAG GCATTCCACA TTTGATCCGC CCGGCCTCAC GGGATGTGCA
GGTGCCTTGC GCATGACCTA CACATTCGAT TTCAGCTTTC TCGCGGAATA CTGGCCCCAG
TTGCTCAAGG GCCTGGTCCA GACCGCGCAG CTTTCGCTCC TGTCGATCAT CTTCGGCTTC
CTGCTTGGAA CCCTGCTGGC GATCGGCCGC ACGGCGCAAA GCAAGCTGCT GCGCCGGATC
TGCGCCATCT ATGTCGAGGC GATCCGCAAC ACGCCGCTGC TGGTGCAGAT GTTCATGATC
TATTTCGGGC TGGCCTCGGT GGGCTTCAAG CTGTCGGCCG AGTTCTGCGC CGTGCTGGCC
ATCGTCATCA ATGTCAGCTC CTATACCTGC GAGATCATGC GCGCCGGCAT CGAATCGGTG
AGAAAGGGCC AGCGCGAGGC TTCGGACTGC CTTGGCCTCA CCTGGCTTCA GTCCCTGTTC
CTCGTCGTGC TGCCGCCCGC GACCGAGCGC GTCTATCCGG CGCTGGTCAG CCAGTTCATC
CTGATCATGC TCGCCACCAG CCTTGTCTCG CAGATCTCGG CCGAGGAACT GACCTCGACC
GCGGCGCGCA TCGACTCGAT GACCTTCCGC TCCTTCGAGA TCTACACGGT GGTCGCCCTG
ATCTACATCG GCCTGGCCTT CGTGTTCCGG CTGGGGTTCT GGGCGCTGTC GCGGCTGGTC
TTCCCGCGCC TGCGCCGCCT CGGCACGCCG CTTTAG
|
|---|
| Protein sequence | MLVRTARHST FDPPGLTGCA GALRMTYTFD FSFLAEYWPQ LLKGLVQTAQ LSLLSIIFGF
LLGTLLAIGR TAQSKLLRRI CAIYVEAIRN TPLLVQMFMI YFGLASVGFK LSAEFCAVLA
IVINVSSYTC EIMRAGIESV RKGQREASDC LGLTWLQSLF LVVLPPATER VYPALVSQFI
LIMLATSLVS QISAEELTST AARIDSMTFR SFEIYTVVAL IYIGLAFVFR LGFWALSRLV
FPRLRRLGTP L
|
|---|
| |