| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4907 |
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| Symbol | |
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| ID | 4583468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | - |
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| Start bp | 410161 |
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| End bp | 413091 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639772210 |
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| Product | sarcosine oxidase alpha subunit family protein |
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| Protein accession | YP_918663 |
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| Protein GI | 119387629 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.232501 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGGC TGACCGGAGG GCTGATCGAC CGCGCCCGCA ACCTGCGCTT CACCTTCGAC
GGCCGGACCT ATGCCGGCCA TCCCGGCGAC ACGCTGGCCT CGGCGCTGTT GGCGAACGGC
GTGCGGCTGA TGGGCCGCAG CTTCAAGTAT CACCGGCCGC GCGGCGTCTT TTCGGCCGGG
TCCGAGGAGC CGAATGCGCT GGTGGAACTG CGCAGCGGCG CCCGGAAAGA GCCCAACAGC
CGTGCCACCG TGGCCGAGCT TTACGATGGG CTTGAGGCCG CCAGCCAGAA CCATGTCGGC
CCGCTGGGCT TCGACCTGCT GGCGGTGAAC GACCTGTTCT CGTCCTTCTT CGCGGCGGGT
TTCTATTACA AGACCTTCAT GTGGCCGCGC GCCTTCTGGG AAAAGCTTTA CGAGCCGGCG
ATCCGCCGGG CGGCGGGCTT GGGCAGCCTG TCGATGCAGC CCGATCCCGA TGCCTATGAC
AAGGGCTTTT TGCATTGCGA CCTGCTGGTC ATCGGCGGCG GCGCGGCGGG TCTTTCGGCG
GCGCTGACCG CTAGCCGGGC CGGGGCGCGG GTCATCCTGG CCGACGAGGA TTTCCGCCTG
GGCGGTCGGC TGCTTGCCGA AAGCCATCTG TTGGACGATG CCCCGGCGAC CGAATGGGTC
GCGCAGGCCG AGGCCGAGCT TGCGGCGCTG CCCAATGTCC GCATCCTGTG TCGGACCACG
GTGATCGGCG CCTTCGACCA CGGCGTCTAT GGCGCGGTCG AGCGTGTCGC CGATCACCTG
CCCGAGCCGG GGCGGCAGGT GCGCCAGACG CTTTGGCGGA TCACCGCCAG CCGCGCCGTG
CTGGCCGCCG GTGCCATCGA ACGGCATATC CCGTTCCGGA ACAACGACCG TCCCGGCATC
ATGCTGGCCG GCGCCATGCG CGCCTATGCC AACCGCTGGG CGGCCAGCCC GGCCAGGCGG
GTGGCGATCT TTACCAATAA CGACGACGGC CACCGCACGG CGCTGGACCT TGCCGCCAAG
GGGATCGAGG TCGCGGCGGT GATCGACAGC CGTTCGGACG CGCAGGCGCA GGGCCACTAC
CGGCTGGTCC ACGGCATGGT CTGCGATGCC AAGGGCCGCC TGGGCCTGCG CGGGGTCCAG
ATCGACAGCG ACGGCCGCAG GGAATGGCTG GATTGCGGCG CGCTCGGCGT CGCGGGCGGC
TGGAACCCGA ACGTGCATCT GGCCTCGCAC CATCGCGGCC GCCCGGTCTG GGACGCGGCG
CTGCAGGCCT TCGTCCCCGG CGAGGGCGGG CCGTGCGGGC TGATCGCCGC CGGTGCCGCG
AAGGGGCAGG GCAGCACCGC TGCCGCGCTG CGCTCGGGCG CCGGGGCGGC GGTCGAGGCG
CTGGCCCAGC TTGGCATCGA GGCCCGGTCC GCCGAGCTGC CGGCGGCCGA GGATGCGCCG
GCCGGTCTGC GCCCGCTTTG GCACGTGCCG GGCAAGGGTC GCGCCTGGGT CGATTTCCAG
AACGACGTGA CCGTCAAGGA CATCAAGCTG GCGCATCAGG AAAACATGCG CCCGGTCGAA
CACCTGAAGC GCTGGACCAC GCTGGGCATG GCCACAGACC AGGGCAAGAC CGCGAATGTC
ACCGCCCTGG CGGTCATGTC GGAACTGACC GGCAAGCCGA TCCCGGAAAC CGGCACGACG
ATCTTTCGCC CGCCTTACAG CGGCGTGTCG TTGTCGGTGC TGGGCGGCGG CGACACGGGG
CCGCATTTCC GCCCGCGCCG CCTGACGCCC ACGCATGAAT GGGCGCGTGC GCAGGGCGCC
GTCTTTGTCG AGGTCGGACC CTGGGTGCGG GCGCAATACT TCCCCCGCCC GGGCGAGACG
CATTGGCGCC AGACCGTGGA CCGCGAGGTC CTGGCCACCC GTGCGGGCGT CGGCATCTGC
GACGTGACCA CGCTTGGCAA GGTGGATGTG CAGGGCGCGG ATGCCGGCGA GTTTCTCGAC
CGGATCTATG CCAATGCCAT GAAAAGCCTC AAGGTCGGCA TGGTCCGCTA TGGCCTCATG
CTGCGCGAGG ACGGGATGGC CTGGGACGAC GGCACCTGCG CCCGGCTGGC CGAGGATCAT
TACGTCACCA CCACCACCAC CGCCCAGGCG GGGCCGGTCT ATCGGCAGAT GGAATTCGCC
CGCCAATGCC TCTGGCCCGA GCTGGACGTG CAGCTGATCT CGACCACCGA CGCCTGGGCG
CAGATCGCCG TGGCCGGTCC CAATGCACGC CGGCTGCTGG AGCGGATCGT GGACGGGTTC
GACCTGTCGA ACGAGGCCTT TCCCTTCATG GCCTGCGCTG GCCTGATGGT TTGCGGCGGG
CTTCGGGCGC GGCTCTTCCG CATCAGCTTC TCGGGCGAGC TGGCCTATGA GATCGCGGTG
CCGGCCCGCT ATGGCCAGGC GCTGGTCGAG CGGCTGATGG AGAAAGGCGC CGATCTGGGC
GCCACCCCCT ACGGCACCGA GGCGCTTGGC GTGATGCGCA TCGAAAAGGG CCATGCCGCC
GGCAACGAGC TGAACGGGCA GACCACGGCG CAGATGCTGG GACTGGGCCG CATGGTCAGC
AGCAAGAAAG ACGGCATCGG CGCCGTGATG TCCCGGCGCG AGGGGCTGGC GGCCGAAACC
CGGGTGCTGG TGGGGCTGCA ACCGGTCGAT CCGGCGCAGC CCGTCCTTGC CGGCATGCAT
CTTTTCGCCG AGGGGGCCGA GCATCGGACC GAGACCGACC AGGGCTGGAT CACCTCGGCC
TGTCATTCGC CGCATGTCGG ATCAAGCATC GGGCTGGGCT TCCTGGCCGA TGGCGGCACC
CGCATGGGCG AGACGGTGAT CGCCGCCAAT CCGCTGCAGG GGCAAAAGGT GGCGCTGCGC
GTCGTCCCGC CGCATTTCAT CGACCCGGAA GGAGGGCGCC TGCGTGACTG A
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| Protein sequence | MTRLTGGLID RARNLRFTFD GRTYAGHPGD TLASALLANG VRLMGRSFKY HRPRGVFSAG
SEEPNALVEL RSGARKEPNS RATVAELYDG LEAASQNHVG PLGFDLLAVN DLFSSFFAAG
FYYKTFMWPR AFWEKLYEPA IRRAAGLGSL SMQPDPDAYD KGFLHCDLLV IGGGAAGLSA
ALTASRAGAR VILADEDFRL GGRLLAESHL LDDAPATEWV AQAEAELAAL PNVRILCRTT
VIGAFDHGVY GAVERVADHL PEPGRQVRQT LWRITASRAV LAAGAIERHI PFRNNDRPGI
MLAGAMRAYA NRWAASPARR VAIFTNNDDG HRTALDLAAK GIEVAAVIDS RSDAQAQGHY
RLVHGMVCDA KGRLGLRGVQ IDSDGRREWL DCGALGVAGG WNPNVHLASH HRGRPVWDAA
LQAFVPGEGG PCGLIAAGAA KGQGSTAAAL RSGAGAAVEA LAQLGIEARS AELPAAEDAP
AGLRPLWHVP GKGRAWVDFQ NDVTVKDIKL AHQENMRPVE HLKRWTTLGM ATDQGKTANV
TALAVMSELT GKPIPETGTT IFRPPYSGVS LSVLGGGDTG PHFRPRRLTP THEWARAQGA
VFVEVGPWVR AQYFPRPGET HWRQTVDREV LATRAGVGIC DVTTLGKVDV QGADAGEFLD
RIYANAMKSL KVGMVRYGLM LREDGMAWDD GTCARLAEDH YVTTTTTAQA GPVYRQMEFA
RQCLWPELDV QLISTTDAWA QIAVAGPNAR RLLERIVDGF DLSNEAFPFM ACAGLMVCGG
LRARLFRISF SGELAYEIAV PARYGQALVE RLMEKGADLG ATPYGTEALG VMRIEKGHAA
GNELNGQTTA QMLGLGRMVS SKKDGIGAVM SRREGLAAET RVLVGLQPVD PAQPVLAGMH
LFAEGAEHRT ETDQGWITSA CHSPHVGSSI GLGFLADGGT RMGETVIAAN PLQGQKVALR
VVPPHFIDPE GGRLRD
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