Gene Pden_4874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4874 
Symbol 
ID4583435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp377124 
End bp378206 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content68% 
IMG OID639772177 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_918630 
Protein GI119387596 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.544883 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.368971 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTT TGGAAACGCA GGGCCTGGGC AAGGTCTATG GCGACTTCGT CGCCCTTGCA 
CCGACCGACC TGAAGGTCGA GAAGGGCGAG TTCCTGACGC TGCTGGGGCC GTCCGGCTCG
GGCAAGACCA CGCTGCTGAG CCTGATCGCC GGGCTGGCCG AGGCCGACAG CGGGCGCATC
CTGATGAACG ACCGGGACGT GACCCATGCC GCGCCCTATC AGCGCGACAT CGGCATGATG
TTCCAGAACT ATGCGCTGTT CCCGCACATG ACCATCGCCG AGAACATCGC CTTTCCGCTG
AAGATGCGCG GCACGCCTGC GGCCGAGATC AAACGGCTGG TGCAGGAGGC ACTGGACATG
GTGCGCCTGC CCCATATTGC GGACCGTTTC CCCAAGGAGC TGTCCGGCGG ACAGCAGCAG
CGCGTGGCCC TTGCGCGCTG CACCATCTAT CGCCCCTCGG TCATCCTGAT GGACGAGCCG
CTGGGCGCGC TGGACAAGAA GCTGCGCGAC CAGATGCAGT TCGAGATCCT GCGCATCCAC
AAGGAGATCG GCGGCACCAT CGTCTATGTC ACCCACGACC AGGAAGAGGC GATGACCATG
TCGGACCGCA TCTGCCTGAT GAACGGCGGC AGGATCGCAC AGCTGGGCAG CCCGGCCGAC
CTGTATTTCC GTCCGCAATC GCTGTTCGTC GCCGATTTCC TGGGCGAGGC GAACCTGCTG
GAGGGCCGCC TCGTCTCGGG CGCGGACGGC GAGGGCGTGG TGCGGCTGGG CGATGCCAGC
GAGATCCGCG TCACCCTGCC CCGGCCGCTG GACCATGGCG CGGCGGTCAA GGTCATGCTG
CGGCCGCAGA ACATCCGCCT TGAGGACACG CCTGGCGAGG GGCTGAACGC CAGGCTGCGC
AGCTGGAGCG TGACCGGCGC CAGCACCAAG TTCTTCCTCG ACGCGCCGGC GCTGGGGTCC
GAGCCGCTGA TCGCCACCCG CGCCACCGCG ATGAGCCATG ACGCGCCCGA GCCCGGCCGC
GACTATCGCC TGAGCTTCGA TCCGCGCGAC GCCGTCGCCA TCCCCGCCGA CGAGGCCGCC
TGA
 
Protein sequence
MSTLETQGLG KVYGDFVALA PTDLKVEKGE FLTLLGPSGS GKTTLLSLIA GLAEADSGRI 
LMNDRDVTHA APYQRDIGMM FQNYALFPHM TIAENIAFPL KMRGTPAAEI KRLVQEALDM
VRLPHIADRF PKELSGGQQQ RVALARCTIY RPSVILMDEP LGALDKKLRD QMQFEILRIH
KEIGGTIVYV THDQEEAMTM SDRICLMNGG RIAQLGSPAD LYFRPQSLFV ADFLGEANLL
EGRLVSGADG EGVVRLGDAS EIRVTLPRPL DHGAAVKVML RPQNIRLEDT PGEGLNARLR
SWSVTGASTK FFLDAPALGS EPLIATRATA MSHDAPEPGR DYRLSFDPRD AVAIPADEAA