Gene Pden_4820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4820 
Symbol 
ID4583382 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp317158 
End bp318759 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content68% 
IMG OID639772124 
Productacyl-CoA synthetase 
Protein accessionYP_918577 
Protein GI119387543 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.755365 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.560915 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC CCGCCACCGA ACCGGCCGGC GGCGTGATCC CGGTCTCGAC CCGGGTGATG 
AACCTTGCCA CCTTCCTGAC CCAGGCCGCG CGGCGCGACC CGGACGGCAT CGCGCTGGTC
ATGGGCGAGG CGTGCTGGAC ATGGGCCGAG TTCGAGGCCC GCACCGACGC GCTGGCCCAT
GCGCTGCAAA CCCGCTTCGG GCTGCAAAAG GGCGACCGGG TGATGTGCCA GTCGCAGAAC
TGCATGGAGA TGATGCAGGC CATGTTCGCC ACCTGGCGCG CGGGCGGCAT CTGGGTGCCC
GCGAACTTTC GCCAGACCCC CGAGGAAGTG GCCTGGCTGA CCGAAGCCTC GGGCGCGCGG
CTGATGCTGT GCAACGCCGC CTTTCCCGAC CATGCGGCAG CCTGCGGAGT AACGACGCTG
GCTTTCGGCG CGGCCGATTT CGGCCCCTCG GTGCAGGCGA TCACCGCCGA ACACCTGGGA
AGCCGCCCGC AGGTCGCGGT GGTGGATCGC GACGATCCCT GCTGGTTCTT CTTCACCTCA
GGCACCACGG GCCGGCCCAA GGCATCGGTG CTGACCCATG GCCAGATGGC CTTCGTGGTG
ACGAACCACC TGGCGGACCT GATGCCGGGC CTGACGGGCG AGGATGCCTC GCTGGTGGTG
GCGCCCTTGT CGCATGGCGC GGGGGTGCAT CAGCTCACGC AGGTGGCGCG CGGGGTGAAA
ACGGTGCTGC TGCCGACCGA GCGTTTCGAC GTGGCGCAGG TCTGGGATCT GGTGCGGGAA
TGGCGGGTGT CCACCATGTT CACCGTGCCG ACGATCCTGA AGCTGCTGGT CGAGCATCCC
GCGACGGCAG GCGCCGACAC CTCGTCCTTG CGCTATGTGA TCTATGCCGG CGCGCCGATG
TATCGGGTGG ACCAGCAAAG GGCGCTGCGC ACCTTGGGCA AGGTGCTTGT GCAATATTTC
GGCCTGGGCG AATGCACCGG CAACATCACC GTGCTGCCTG CGCATCTGCA CGATGCCGAG
GACGGCCCGA CCACCCGCAT CGGCACCTGC GGCCATGCCC GCACCGGGAT CGAGATCCAG
ATCCAGGACG ATCAGGGCCG CGAACTGCCG CCCGGCCAGA CCGGAGAGAT CTGCGTGATC
GGCCCCGCCG TCTTTGCCGG CTACTACCGG AACCCGCAGG CCAATGCGAA AGCCTTTCGC
GACGGCTGGT TCCGCACCGG CGACCTGGGC CACATGGACG AGGCGGGGTT CCTGTATATC
ACCGGGCGCG AGTCGGACAT GTTCATCTCG GGCGGCTCGA ACGTCTATCC GCGCGAGATC
GAGGAAAAGA TCCTGACCCA TCCCGCCATT TCCGAGGTCG CGGTGCTGGG CGTCCCCGAT
CCGCTTTGGG GCGAGGTCGG CTGGGCGATC TGCGTGGCAA GCGCGCCGGT GACCGAGGAG
GAGCTGGCGG CGTTCGTCGC GCCCAAGCTT TCGCGCTACA AGCTGCCCAA GCGCTTCCTG
TTCTGGGACG GCCTGCCGAA ATCGGCCTAT GGCAAGATCA CCAAGAAGAT GATCCGCGAA
GAGCTGGAGG CGCGCGGCCT GCTGGAGCAG GCCCCGGCAT GA
 
Protein sequence
MTEPATEPAG GVIPVSTRVM NLATFLTQAA RRDPDGIALV MGEACWTWAE FEARTDALAH 
ALQTRFGLQK GDRVMCQSQN CMEMMQAMFA TWRAGGIWVP ANFRQTPEEV AWLTEASGAR
LMLCNAAFPD HAAACGVTTL AFGAADFGPS VQAITAEHLG SRPQVAVVDR DDPCWFFFTS
GTTGRPKASV LTHGQMAFVV TNHLADLMPG LTGEDASLVV APLSHGAGVH QLTQVARGVK
TVLLPTERFD VAQVWDLVRE WRVSTMFTVP TILKLLVEHP ATAGADTSSL RYVIYAGAPM
YRVDQQRALR TLGKVLVQYF GLGECTGNIT VLPAHLHDAE DGPTTRIGTC GHARTGIEIQ
IQDDQGRELP PGQTGEICVI GPAVFAGYYR NPQANAKAFR DGWFRTGDLG HMDEAGFLYI
TGRESDMFIS GGSNVYPREI EEKILTHPAI SEVAVLGVPD PLWGEVGWAI CVASAPVTEE
ELAAFVAPKL SRYKLPKRFL FWDGLPKSAY GKITKKMIRE ELEARGLLEQ APA