Gene Pden_4811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4811 
Symbol 
ID4583373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp306183 
End bp307388 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content69% 
IMG OID639772115 
Productbeta-ketoadipyl CoA thiolase 
Protein accessionYP_918568 
Protein GI119387534 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.346578 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGACG CCTTCATCTG TGATGCGGTG CGCACGCCGA TCGGTCGCTA TGGCGGGGCG 
CTGGCCTCGG TCCGGGCGGA CGACCTGGCC GCGGTGCCGC TGAAAGCGCT GATGGAGCGC
AATCCGGGCG TGGATTGGTC GGCGGTGGAC GACCTGATCT ATGGCTGCGC CAACCAGGCG
GGCGAGGACA ATCGCAATGT CGGGCGCATG GCGGTGCTGC TGGCCGGGAT GCCGGTGGGC
GTGCCGGGGA CGACGGTGAA CCGGCTTTGC GGCTCGGGCA TGGATGCGGT CGGCATGGCG
GCCCGCGCCA TCAAGGCGGG CGATTGCGAT TTCGTCATCG CCGGCGGCGT CGAAAGCATG
ACCCGCGCCC CCTTCGTGAT GCCCAAGGCG GAAACCGCCT TTTCCCGCGC CAATGCGGTC
TATGACACCA CCATCGGCTG GCGCTTCGTC AATCCGGCGA TGAAGGCGCG GTTCGGCATC
GATTCGATGC CCCAGACCGC CGACAACGTG GCCGCCGATT TCAGCATCAG CCGCGCCGAC
CAGGACGCTT TCGCTGCCCG CAGCCAGGCC CGCTGGGAAG CGGCGCAGAA GGCGGGCGTC
TTTGCCGACG AGATCGTGCC GGTCATCGTG CCGCAGAAGA AGGGCGAGCC CGTCGTGGTC
GATACCGACG AGCATCCCCG CCCCGGCACC ACGGCCGAGA CGCTGGCCAA GCTCAGGGGC
GTGAACGGTC CCGACCTGAC GGTGACGGCC GGCAATGCCT CGGGCGTGAA CGACGGCGCT
GCCGCCTTGG CGATCCTGTC GGGTGCGGCG GCGGAGCGGC ACGGCCTGGT GCCGAAGGCG
CGCATCGTCG CCATGGCGGC GGCGGGGGTC GAGCCGCGCA TCATGGGCAT CGGCCCGGCG
CCGGCGGCGA AAAAGGTCTT GGCGCGCGCG GGGCTGACCA TCGGGCAGAT GGATGTGATA
GAATTGAACG AGGCCTTCGC CAGCCAGGCG CTGGCGACCC TGCGCGATCT TGGCCTGCCC
GACGATGCCG CCCATGTGAA CCCGAACGGC GGCGCCATCG CGATCGGCCA TCCGCTTGGC
ATGTCGGGGG CCCGGCTTGT GACGACGGCG ATGTATCAGT TGCATCGCAC CGGAGGGCGC
TATGCGCTTT GCACCATGTG CATCGGCGTG GGACAGGGCA TCGCCCTCAT CATCGAACGC
GTTTGA
 
Protein sequence
MQDAFICDAV RTPIGRYGGA LASVRADDLA AVPLKALMER NPGVDWSAVD DLIYGCANQA 
GEDNRNVGRM AVLLAGMPVG VPGTTVNRLC GSGMDAVGMA ARAIKAGDCD FVIAGGVESM
TRAPFVMPKA ETAFSRANAV YDTTIGWRFV NPAMKARFGI DSMPQTADNV AADFSISRAD
QDAFAARSQA RWEAAQKAGV FADEIVPVIV PQKKGEPVVV DTDEHPRPGT TAETLAKLRG
VNGPDLTVTA GNASGVNDGA AALAILSGAA AERHGLVPKA RIVAMAAAGV EPRIMGIGPA
PAAKKVLARA GLTIGQMDVI ELNEAFASQA LATLRDLGLP DDAAHVNPNG GAIAIGHPLG
MSGARLVTTA MYQLHRTGGR YALCTMCIGV GQGIALIIER V