Gene Pden_4794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4794 
Symbol 
ID4583356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp289554 
End bp290333 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content67% 
IMG OID639772098 
ProductABC transporter related 
Protein accessionYP_918551 
Protein GI119387517 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.130359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.133792 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTGC TTTCGGTCGA GGGTCTGGGC ATCAGCTTCG GCGGCATCAA GGCCGTGCAT 
GATGTCAGCT TCAAGGTCGA GCCGGGCGAG ATCGTCTCGG TCATCGGCCC GAACGGCGCC
GGCAAGACCA CGCTGTTCAA CATGATCTCG GGCGTCTATC GGCCCGGCTT GGGCCGCGTG
GTGCTGGAGG GCGAGGACGT GACCGGCATG GCGCCGTTCC GGCTGGCGCA GCGGGGCATG
TCGCGCACCT TCCAGAACCT GCAGATATTC CAGAACATGA CGGTGCTGGA AAACGCCATC
TCGGGCTTTC ACTTGCAGGA AAAGGGGCCG GTCCTGGCGG ATCTCCTGCA TCTGCCGTCC
TCGCGCCGCC GGGCGCGGGC GGCCGATGCG GGCGCGCGCG CGCTTCTGGC CCGCGTCGGG
CTGGAGCGCG CGGCGGATCG CGAGGCGGGG AACCTGTCCT ATGGCTCGCT CAAGCGGCTG
GAGATCGCCC GCGCGCTGGC GATGAAGCCC AAGGTGCTGT TGCTGGACGA GCCGGCGGCG
GGCTGCAACG CCGTCGAGAC CGAGGAGATC GACCACCTGA TCGCCGAGGT CGCGGCATCC
GGCACCGCCA TCCTGCTGGT TGAGCACGAC ATGAAGATGG TCATGCGCAT CTCCAGCCAT
ATCGTGGTGC TGGACCATGG CGAAAAGATC GCTGAGGGCT CGCCGGCCGA GGTCAGCCGC
AACCCGGCGG TGATCGCCGC CTATCTGGGA ACCGAGGAGG GTGCCGATGC TGACGGTTGA
 
Protein sequence
MTLLSVEGLG ISFGGIKAVH DVSFKVEPGE IVSVIGPNGA GKTTLFNMIS GVYRPGLGRV 
VLEGEDVTGM APFRLAQRGM SRTFQNLQIF QNMTVLENAI SGFHLQEKGP VLADLLHLPS
SRRRARAADA GARALLARVG LERAADREAG NLSYGSLKRL EIARALAMKP KVLLLDEPAA
GCNAVETEEI DHLIAEVAAS GTAILLVEHD MKMVMRISSH IVVLDHGEKI AEGSPAEVSR
NPAVIAAYLG TEEGADADG