Gene Pden_4772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4772 
Symbol 
ID4583275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp270444 
End bp271328 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content72% 
IMG OID639772076 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_918529 
Protein GI119387495 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.586896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCCTG ACCGCGCCAC GGAAACCTTT GAGGCGCAGC GGCCCCGTCT GCTGCGCCTG 
GCCTATCGCA TGCTCGGCAG CCATGCCGAG GCCGAGGACA TCCTGCAGGA AGCCTGGCTG
CGCTGGGACC GCAGCGACCG GGCGGCCATC GCCGAGCCGG CGGCATGGCT GACGCGCGTG
GTCTCGCGCC TGTGCCTCGA CCAGATGAAA TCGGCCCGTG CCCGGCGCGA GTCCTATCCC
GGCACCTGGC TGCCCGAGCC GCTGATCGAA CCCCAAGACG ACAGCCTGCG CGCCGACAAC
CTGACGCTGA CCCTGATGAT GGCGCTGGAG CGGTTGACGC CGCTGGAACG CGCCGCCTTC
CTGCTGCACG ACGTCTTTGG CGAAGGGCTG GACGAGGTCG CGGAAACCAT CGGCCGCAGC
CCGGCCGCCA CGCGCCAGCT TGCGGCGCGG GCGCGGGCGC ATGTGCGCAT CGACCGGCCC
CGCCACGCCG TTCCGAAAGA GGCCGGCGAA GTGCTGGCCC GGGCCTTTTT CGAGGCTTGC
CGGCAGGGCG ATCCGGCCGT GCTGGGCCGG ATCCTCGCGC GCGACGTGCA GGTCCATTCC
GATGGCGGCG GCAAGGTGCT GGCCTTCCTC AACGTCATCG CCGGGGCCGA GCGCGTCGCC
CGGCTTTATG CCGGGCTGGC GCGCAAGCCC GGCCCGCGGC CCGAATTCCT GGGCGCCGTC
ACCATCGACG GCCTGCCGGG TTTCCTCAGC CGCGTCGGCG GCCACCTGCA GACCACCGCC
TTGCAGATCA GGGATGACGG CCGCATCGCC GCCATCTTCA TCACCCGCAA CCCCGACAAG
CTGGCGGGGC TGCGGCCGGG CCGTCAGAAC GGGCTGTCGG GATAA
 
Protein sequence
MRPDRATETF EAQRPRLLRL AYRMLGSHAE AEDILQEAWL RWDRSDRAAI AEPAAWLTRV 
VSRLCLDQMK SARARRESYP GTWLPEPLIE PQDDSLRADN LTLTLMMALE RLTPLERAAF
LLHDVFGEGL DEVAETIGRS PAATRQLAAR ARAHVRIDRP RHAVPKEAGE VLARAFFEAC
RQGDPAVLGR ILARDVQVHS DGGGKVLAFL NVIAGAERVA RLYAGLARKP GPRPEFLGAV
TIDGLPGFLS RVGGHLQTTA LQIRDDGRIA AIFITRNPDK LAGLRPGRQN GLSG