| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4771 |
|---|
| Symbol | |
|---|
| ID | 4583274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 269506 |
|---|
| End bp | 270465 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639772075 |
|---|
| Product | ABC ribose transporter, periplasmic solute-binding protein |
|---|
| Protein accession | YP_918528 |
|---|
| Protein GI | 119387494 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA GAAGCCTGAT GAAAGCCGCC GCGCTGATGG CCGCGATGGG GATCGCCGCC
CCCGCCGTCG CGCAGGACGC CGAGAAAAAG ATCATCGGCG TGTCGATCCC GTCCGCCACG
CATGGTTTCA TGGGCGGGCT GAACTGGCAC GCGCAGGACA CGATCAAGCG GCTGGGCGCG
GCCTATCCCA ACCTTGAATT CGTGCTCTCC ACCGCCGGCG ACCCGGCCAA GCAGGTCAAC
GACATCGAGG ACATGATGGC CACGCGCAAC ATCGACGCGC TGGTGGTGCT GCCCTTCGAA
TCCGAGCCGC TGACCGCGCC CGTCAAGGCG GTCAAGGATG CGGGCAAGTT CGTGACCGTG
GTGGACCGCG GGCTGAGCCA GGAGGGGATC GAGGACCTTT ACGTCGCCGG CGACAACACC
GCCTTCGGCC GCGTGGCCGG GGAATATTTC CGCGACACCC TGCCGGCCGG CGCCAAGGTC
GTGGTGCTGC GCGGCATCCC GACCACGCTG GACAACGAGC GCGTCGATGC GTTCCGGGCG
GCGCTGGAGG GCTCCGAGGT CCAGATTCTG GACATGCAGC ACGGCAACTG GAACCGCGAC
GACGCCTTTG CGGTGATGCA GGACTATCTG GCGAAATATC CGCAGATCGA CGCGGTCTGG
GCCGCCGACG ACGACATGGC CATCGGCGTG CTCGAGGCGA TCTCGGCCGC GAACCGCCAG
GACGAGATGT GGGTGATCGG CGGCGCCGGC ATGAAAGAGA TCGTCAAGCG CATCATGGAC
GGCGACAAGC AGCTGCCGGT GAACGTGACC TATCCGCCGG CGCTGATCTC TTCGGCCATC
GAGATGACGG CGCTGAACTT CGTGTCGAAC GCGCCGATGA CCGGGCGCTT CATCATCAGC
AGCCAGCTCA TCACGCCCGA GAACGCCGAG CAGTTCTATT ATCCCGACAG CCCGTTCTGA
|
|---|
| Protein sequence | MKRRSLMKAA ALMAAMGIAA PAVAQDAEKK IIGVSIPSAT HGFMGGLNWH AQDTIKRLGA
AYPNLEFVLS TAGDPAKQVN DIEDMMATRN IDALVVLPFE SEPLTAPVKA VKDAGKFVTV
VDRGLSQEGI EDLYVAGDNT AFGRVAGEYF RDTLPAGAKV VVLRGIPTTL DNERVDAFRA
ALEGSEVQIL DMQHGNWNRD DAFAVMQDYL AKYPQIDAVW AADDDMAIGV LEAISAANRQ
DEMWVIGGAG MKEIVKRIMD GDKQLPVNVT YPPALISSAI EMTALNFVSN APMTGRFIIS
SQLITPENAE QFYYPDSPF
|
|---|
| |