Gene Pden_4725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4725 
Symbol 
ID4583228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp211902 
End bp212627 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content71% 
IMG OID639772029 
Producthypothetical protein 
Protein accessionYP_918482 
Protein GI119387448 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.226537 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.100383 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCATCT GGAATACCCT GGCCCGCGCC GATACCGCGG CGGGCGACGA AATCCTGCTG 
CGCCAGCGCG GCGCCCTTTA CGAGATCCGC TTCAACGGCC TGGAGCTGAT GTCGAACCTC
AACCACCAAT CCGAGACCGT GCTGGCCGAG CGCAGCCTGC GCCTGCATGG CCGCAGCGAC
GCCCGCGTGC TGATCGGCGG GCTGGGCATG GGCTTTACCC TGCGCGCCGC GCTGGAATTG
CTGGGGCCTG CCGCGCAGGT CACGGTCTGC GAGCTGATCC CCCAGATCGC CGGCTGGAAC
CGCGACCGCA TCGGCCATCT GGCCGGCCAC CCGCTGCGCG ATCCGCGCGT CACCCTGCGG
ATCGCGGATG TGATGGAGGT GCTGCTGGAA CACCGCGCCG CCTTCGACGT GATCCTGATG
GATACCGACA ACGGCCCGGA TTTCACCGTG CGCCAGGCGA ACGGCCGGCT TTACGGCGAA
GGCGGCCTTG CGGTGCTGCG CAAGGCGCTG CGGCCCGACG GCATCGCCGC CTTCTGGTCC
GCCACCGCCT CGGACCCGTT CGAGCGCGTG CTGGACGCCC AGCCCTGGCA TTGGCGGCGC
GCCGACATCC AGTTGATCGG CGGGCGGGTC GATGCCTTCC ACCACATTTA CCTGGCCTCG
GCCGAGGCCG GGCGGATCGG CCTGCGGGCC TCGCCGGACG CTCTGCCCGC GCTGGCGCTG
TCCTGA
 
Protein sequence
MPIWNTLARA DTAAGDEILL RQRGALYEIR FNGLELMSNL NHQSETVLAE RSLRLHGRSD 
ARVLIGGLGM GFTLRAALEL LGPAAQVTVC ELIPQIAGWN RDRIGHLAGH PLRDPRVTLR
IADVMEVLLE HRAAFDVILM DTDNGPDFTV RQANGRLYGE GGLAVLRKAL RPDGIAAFWS
ATASDPFERV LDAQPWHWRR ADIQLIGGRV DAFHHIYLAS AEAGRIGLRA SPDALPALAL
S