Gene Pden_4715 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4715 
Symbol 
ID4583218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp203601 
End bp204569 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content66% 
IMG OID639772019 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_918472 
Protein GI119387438 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.517095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00914415 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACACG TCCTTGCCGC GGCGCTCGTC TGCGCCGCCT TCGCCGCGCC CTCGTTCGCG 
CAGGAAATCA AGATCGGCTA CGCGCTGGCC GAGGACAGCC ATTACGGCGC CGGCGCCAAG
GCCTTCGAGG CCTCGCTCAA GGAAAGCCTG GGCGACCAGT TCAGCTTCCG TCACTTCCCC
TCTTCGGGGC TGGGCGGCGA GCGCGAGGTG CTGGAGGGGC TGCAACTCGG CACCGTCGAG
ATGACCATCG CCTCGGACGG GACGCTGACC AATTTCGTGC CCGAGGTGGG CGTGCTGGGC
ATTCCCTTCC TGCTGCGCGA CAAGGACCAT GCCCGCAAGG TGCTGGATGG CGAAATCGGG
CAGGAAATGC TGGCGAAATT CGACCCCGCC GGCCTGCATG CGCTGGCCTG GGGCGAGCAG
GGCTTCCGCC ATATCACCTC GAACCGCGGT GCGGTCGAGG CACCGGCCGA CCTGAACGGA
CTCAAGATCC GCACCATGGA AAACCCGGTG CATATCGAGG CCTTCCGCGC CCTTGGCGCC
GCCCCCACCC CGATGGCCTG GCCCGAGGTG ATCGGCGCGC TGGAGCAAGG CGCCATCGAC
GGGCAGGAAA ACCCGCTTTC AGTGATCGTC TCGGCCAAGC TGAACGAGGT GCAGAAATAC
CTGACGCTGG ACGGGCACGT CTATTCCTCG ACCATCATCC TGGTCTCGCC CGCCCTGTGG
AACGGGCTGG ACGATGCGCA GAAGGCGGCC TTCGAAAAGG CGGCCGGGGA CGCGGTGACG
GCCATGCGCG CCTATGTCGA CGATGTCGAT GCGTCGGGCA TCGCCTCGAT GCAAGAGGCC
GGGATGCAGG TGAACGAGCT TTCGCCCGAG CAGAAGGCCG CCTTCCGCGA GGCGCTGGCC
GGGCCTTACC AGCAATATGA GGCCCAGTTC GGCAAGGAGC TGATGGACCG CATCCAGGCG
GTCGAGTAA
 
Protein sequence
MKHVLAAALV CAAFAAPSFA QEIKIGYALA EDSHYGAGAK AFEASLKESL GDQFSFRHFP 
SSGLGGEREV LEGLQLGTVE MTIASDGTLT NFVPEVGVLG IPFLLRDKDH ARKVLDGEIG
QEMLAKFDPA GLHALAWGEQ GFRHITSNRG AVEAPADLNG LKIRTMENPV HIEAFRALGA
APTPMAWPEV IGALEQGAID GQENPLSVIV SAKLNEVQKY LTLDGHVYSS TIILVSPALW
NGLDDAQKAA FEKAAGDAVT AMRAYVDDVD ASGIASMQEA GMQVNELSPE QKAAFREALA
GPYQQYEAQF GKELMDRIQA VE