Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_4715 |
Symbol | |
ID | 4583218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008688 |
Strand | + |
Start bp | 203601 |
End bp | 204569 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639772019 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_918472 |
Protein GI | 119387438 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.517095 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00914415 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAACACG TCCTTGCCGC GGCGCTCGTC TGCGCCGCCT TCGCCGCGCC CTCGTTCGCG CAGGAAATCA AGATCGGCTA CGCGCTGGCC GAGGACAGCC ATTACGGCGC CGGCGCCAAG GCCTTCGAGG CCTCGCTCAA GGAAAGCCTG GGCGACCAGT TCAGCTTCCG TCACTTCCCC TCTTCGGGGC TGGGCGGCGA GCGCGAGGTG CTGGAGGGGC TGCAACTCGG CACCGTCGAG ATGACCATCG CCTCGGACGG GACGCTGACC AATTTCGTGC CCGAGGTGGG CGTGCTGGGC ATTCCCTTCC TGCTGCGCGA CAAGGACCAT GCCCGCAAGG TGCTGGATGG CGAAATCGGG CAGGAAATGC TGGCGAAATT CGACCCCGCC GGCCTGCATG CGCTGGCCTG GGGCGAGCAG GGCTTCCGCC ATATCACCTC GAACCGCGGT GCGGTCGAGG CACCGGCCGA CCTGAACGGA CTCAAGATCC GCACCATGGA AAACCCGGTG CATATCGAGG CCTTCCGCGC CCTTGGCGCC GCCCCCACCC CGATGGCCTG GCCCGAGGTG ATCGGCGCGC TGGAGCAAGG CGCCATCGAC GGGCAGGAAA ACCCGCTTTC AGTGATCGTC TCGGCCAAGC TGAACGAGGT GCAGAAATAC CTGACGCTGG ACGGGCACGT CTATTCCTCG ACCATCATCC TGGTCTCGCC CGCCCTGTGG AACGGGCTGG ACGATGCGCA GAAGGCGGCC TTCGAAAAGG CGGCCGGGGA CGCGGTGACG GCCATGCGCG CCTATGTCGA CGATGTCGAT GCGTCGGGCA TCGCCTCGAT GCAAGAGGCC GGGATGCAGG TGAACGAGCT TTCGCCCGAG CAGAAGGCCG CCTTCCGCGA GGCGCTGGCC GGGCCTTACC AGCAATATGA GGCCCAGTTC GGCAAGGAGC TGATGGACCG CATCCAGGCG GTCGAGTAA
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Protein sequence | MKHVLAAALV CAAFAAPSFA QEIKIGYALA EDSHYGAGAK AFEASLKESL GDQFSFRHFP SSGLGGEREV LEGLQLGTVE MTIASDGTLT NFVPEVGVLG IPFLLRDKDH ARKVLDGEIG QEMLAKFDPA GLHALAWGEQ GFRHITSNRG AVEAPADLNG LKIRTMENPV HIEAFRALGA APTPMAWPEV IGALEQGAID GQENPLSVIV SAKLNEVQKY LTLDGHVYSS TIILVSPALW NGLDDAQKAA FEKAAGDAVT AMRAYVDDVD ASGIASMQEA GMQVNELSPE QKAAFREALA GPYQQYEAQF GKELMDRIQA VE
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