Gene Pden_4686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4686 
Symbol 
ID4583189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp178334 
End bp181072 
Gene Length2739 bp 
Protein Length912 aa 
Translation table11 
GC content68% 
IMG OID639771990 
ProductABC transporter related 
Protein accessionYP_918443 
Protein GI119387409 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.248247 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCC TGCCCGACCA GCCCGATGGC CCGCCCGTGG CCGAGATCGC CGGGGTCTCG 
CTGCGCTATC GCAGGGTTGT GGCGCTGGAC GGGGTGTCGC TGGCGGTCCC CGCCGGCTGC
ATGGTCGGGT TGATCGGTCC CGACGGCGTC GGCAAGTCCA GCCTGCTCTC GCTGATCGCC
GGCGCGCGGG TGATCCAGCA GGGCCAGATC CGCGTGCTTG GCGGCGACAT GGCCGACGCG
CATCACCGCG CCCGGATCTG CCCGCGCATT GCCTATATGC CGCAGGGGCT GGGCCGGAAC
CTCTATCCTA CGCTTTCGGT GGCCGAGAAT CTGGATTTCT TCGGCCGGCT TTTCGGCCAC
GGCGCGGCCG AGCGTGCGCG CCGCATCGAC GCGCTTCTGG CCGCGACCGG CATGTCGCCG
TTTCGCGACC GGCCGGCGGC CAAGCTTTCG GGCGGGATGA AGCAGAAGCT GGGCCTGTGC
TGCGCGCTGA TCCACGACCC CGACCTGCTG ATCCTGGACG AGCCGACCAC CGGCGTCGAT
CCGCTGTCCC GCCGCCAGTT CTGGGAGCTG ATCGCGCGCA TCCGCCGCGA CCGCCCGGGC
ATGAGCGTGA TCGTGGCGAC CGCCTATATG GAAGAGGCCG CCGGCTTCGA CTGGCTGGTG
GCGATGGATG GCGGCCGGGT GCTGGCCACC GGCAGCCCGG CCGAGTTGCT GGAGCGCACC
GGGGCCGAGG ATCTGGACCG CGCCTTCATC GCGCTCTTGC CCGACAGCGA AAGGCGCGGG
CACGAGCCGG TCTCGATCCC GCCGCGCCGG GCCGAGGACG GCGAGCCCGC CATCGAGGCG
CGGCACCTGA CCATGCGCTT CGGCGATTTC ACCGCCGTCG ACGATGTCAG CTTCCGCATC
GGCAAGGGCG AGATCTTCGG CTTTCTCGGC TCGAACGGCT GCGGCAAGAC CACGACGATG
AAGATGCTGA CCGGGCTCTT GCAACCCAGC GAGGGCACGG CACGGCTGTT CGGCGTCGAA
CTCGATCCTT CGGACATGGC GGTGCGCCGC CGGGTCGGGT TCATGAGCCA GTCCTTCTCG
CTTTATTCCG AACTGACGGT GCGGCAGAAC CTCGAGTTGC ACGCGCGCCT TTTCGGCATG
GAGGCCGGGG CGATCCCGGA TCGCGTCCGG CAGATGATCG AGCGCTTCGG CCTGGCCGCC
GTGGCGGACG ACCTGCCCGA TGCGCTGCCG CTGGGTATCC GCCAGCGCCT GTCCTTGGCC
GTCGCTATGA TCCACGGCCC CGAGATCCTG ATCCTGGACG AGCCGACCTC GGGCGTCGAT
CCGGTGGCGC GCGATGGCTT CTGGCGCATG CTGGGCGAGC TGTCGCGCCA GGACGGGGTG
ACGATCTTCG TCTCGACCCA TTTCATGAAC GAGGCCGAGC TTTGCGACCG CATCTCGCTG
ATGCATGCCG GTCGCGTGCT GGTCAGCGAC ACGGCCGAGG CGATCAAGCG GGCCAAGGGA
GCGGCTACGC TGGACGACGC CTTCGTCGCC TATCTGCAAG AGGCGATCGG CGATGAGCCC
CCGCCCACGC GCCTCGCCGA TGCGACCGAG ACGGCCGCGC GGCCGGGCGG CTGGTTCAGC
CCGGCGCGCA TGCTCAGCTA TTCCCGGCTG GAATCGCTGC AACTCATGCG CGATCCGATC
CGGCTGACGC TGGCGCTGAT CGGCAGCCTG ATCCTGATGT TCGTCATCGG CTACGGCATC
AACATGGATG TCGAGGACCT GAGCTTCGCC GTGCTCGACC GCGACCGGAC CACGACCTCG
CGCGACTATG TTCTGGACAT CGCCGGTTCG CGCTATTTCA CCGAAACCGC GCCCTTGGCG
GATTACGACG ACATGGACGC GCGCATGCGC ACCGGCCGGC TTGCGCTGGC CATCGAGATC
CCGCCCGGCT TTGCCCGCGA CCTGGTGCGC GGCGGTGCCG TGCAGGTCGG TGCCTGGATC
GACGGCGCCA ACCCGACCCG GGCCGAGACC GTGCGCGGCT ATGTGCAGGG CATGCATGCC
GACTGGATCA TGCGCAAGAC GCGCGAGGCC CATGGCGAGG CGGCGGTGCA GGGCGCCTTC
GAGTTGGTGA CGCGCTTTCG CTACAACCCC GACGTGAAAA GCATCGTCGC GATGGTGCCG
GCGGTGATCC CGCTGCTTTT GCTGCTGATC CCGGCGGTGC TGACCACGCT CAGCGTCGTG
CGCGAAAAGG AACTGGGCTC GATCATCAAT TTCTACGTCA CTCCGGTCAC GCGGCTGGAA
TTCCTGATCG GCAAGCAATT GCCCTATGTG GCGCTGGCCA TGCTGAATTT CGCGCTGATG
ACGGCTTTTG CGGTCTTTGC GTTCCGCGTG CCCTTCACCG GCAGCCTGAC GGCCTTTGCG
CTGGCCGCGC TGCTTTATGT CGGCGCCACC ACGGCCATGG GGCTGCTGAT CTCGTCCTTC
ATGCGCAGTC AGGCGGCGGC GCTGTTCGCC ACCGTGCTGC TGACCATGAT CCCCGGCGCA
CAATATTCCG GGCTGCTCGA CCCGGTTTCC TCGCTGCAAG GCGTGGGCCG CGCCATCGGC
GAGGTCTATC CGACGACGCA TTTCATCATC GCCTCGCGCG GGGCCTTTTC CAAGGGGCTG
GGCTTTGCCG ACCTGGGCAT GGCCTTCGCG GCACTGGCGG CGGCCGTTCC GATCATCCTG
GGGCTCAGCG CCCTGCTGCT GAGGAAACAG GCGAAATGA
 
Protein sequence
MTALPDQPDG PPVAEIAGVS LRYRRVVALD GVSLAVPAGC MVGLIGPDGV GKSSLLSLIA 
GARVIQQGQI RVLGGDMADA HHRARICPRI AYMPQGLGRN LYPTLSVAEN LDFFGRLFGH
GAAERARRID ALLAATGMSP FRDRPAAKLS GGMKQKLGLC CALIHDPDLL ILDEPTTGVD
PLSRRQFWEL IARIRRDRPG MSVIVATAYM EEAAGFDWLV AMDGGRVLAT GSPAELLERT
GAEDLDRAFI ALLPDSERRG HEPVSIPPRR AEDGEPAIEA RHLTMRFGDF TAVDDVSFRI
GKGEIFGFLG SNGCGKTTTM KMLTGLLQPS EGTARLFGVE LDPSDMAVRR RVGFMSQSFS
LYSELTVRQN LELHARLFGM EAGAIPDRVR QMIERFGLAA VADDLPDALP LGIRQRLSLA
VAMIHGPEIL ILDEPTSGVD PVARDGFWRM LGELSRQDGV TIFVSTHFMN EAELCDRISL
MHAGRVLVSD TAEAIKRAKG AATLDDAFVA YLQEAIGDEP PPTRLADATE TAARPGGWFS
PARMLSYSRL ESLQLMRDPI RLTLALIGSL ILMFVIGYGI NMDVEDLSFA VLDRDRTTTS
RDYVLDIAGS RYFTETAPLA DYDDMDARMR TGRLALAIEI PPGFARDLVR GGAVQVGAWI
DGANPTRAET VRGYVQGMHA DWIMRKTREA HGEAAVQGAF ELVTRFRYNP DVKSIVAMVP
AVIPLLLLLI PAVLTTLSVV REKELGSIIN FYVTPVTRLE FLIGKQLPYV ALAMLNFALM
TAFAVFAFRV PFTGSLTAFA LAALLYVGAT TAMGLLISSF MRSQAAALFA TVLLTMIPGA
QYSGLLDPVS SLQGVGRAIG EVYPTTHFII ASRGAFSKGL GFADLGMAFA ALAAAVPIIL
GLSALLLRKQ AK