Gene Pden_4682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4682 
Symbol 
ID4583185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp174512 
End bp175090 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content67% 
IMG OID639771986 
Productputative PAS/PAC sensor protein 
Protein accessionYP_918439 
Protein GI119387405 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.706561 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGAC CCGCTTGGCA GCCCCAGAGC CGGGATTACG ACAGCCTCGG TTTCCAGAAC 
GCCCCCGATG CGACGCTGGT CCTGGTCGAC CGGGTGATCG TCCGGGCCAG CCTGATGGTC
GAGGCGGTCT TCGGCTGGAC CCCGCAGGAG CTGGAGGGGC AGTCCATGCG TTGCCTTTAC
CCGGGCCAGA CCGATTTCGA CCTGGTCGGC GAACGTGCGC GCAAGGCGCT GCGGGAGCGG
CCGTTCTATC GGGACGAACG CTTCATGCGG CGCAAGGACG GCCGCATCCT GTGGATGGAG
GGCAGGGGGC GGACCATGGA TCAAGACGAC CCGCACCGCC TGGCGATCTG GACCTATCGG
CCGCTGGAGG CCGCGGTCGG TGCCGGCAGC CTGCTGACGG CGACGGAGAA GCGCATCGCC
GGTTATCTGG TCAACGGCTT TACCAGCAAG GAGATCGCCA AGTCGCTGGG CTGTTCGCCG
CGCACGGTCG AGGTCCACCG CGCCAACATG ATCCGCAAGA CGGGGGTGCG GAACAGCTTC
GAACTGGTCC GGCGGTTGCT CGACATCGGT GCAGGCTGA
 
Protein sequence
MQRPAWQPQS RDYDSLGFQN APDATLVLVD RVIVRASLMV EAVFGWTPQE LEGQSMRCLY 
PGQTDFDLVG ERARKALRER PFYRDERFMR RKDGRILWME GRGRTMDQDD PHRLAIWTYR
PLEAAVGAGS LLTATEKRIA GYLVNGFTSK EIAKSLGCSP RTVEVHRANM IRKTGVRNSF
ELVRRLLDIG AG