Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_4669 |
Symbol | |
ID | 4583172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008688 |
Strand | - |
Start bp | 161088 |
End bp | 161732 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639771973 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_918426 |
Protein GI | 119387392 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.287398 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGGAC TTACCATCCA ACAGATCGCC TATATCTTTC AGGGTGCAGG CTGGACCATC ATCCTGTCGC TTCTGGGTTT CGTCGGCGGC ACCGTGCTGG GCCTGCCGAT CGCGCTGGCC CGATCCTCGA ACAGCAAGGC CCTGCGGGTC GCCTCGTCGC TTCTGGTGCA GTTCATCCAG GGCGTGCCGC TGCCGGTGAT CATGTTCGTC GTCTATTTCG GCATCAGCAT CGGCGGCTTC GAGGTTCCGG CGCTGGTCGC GGCCGGCCTG GCCATGACGC TTTATTCCGG CGCCTATCTG GGTGAGATCT GGAAAGGCTG CATCCAGGCC GTGCCGAAGA CCCAGTGGGA GGCCGCCGAG TGCCTGGCCC TGACCCCTGC GCAGCGCTTC GTCTACGTCG TCCTGCCGCA AGCGCTGCGC ATCGCCATCC CGCCGACGGT GGGGTTCATG GTGCAGATCG TCAAGAACAC CTCTTACGCG GTGGTCATCA ACTTCTTCGA CCTGACCTAT TCGGCCAAGG TCATCAACAA CTCGACCTTC ATGCCCTTTA CGGTCTTCAC CCTCGCTGCC GCGATCTACT TTGCCATCTG CTTCCCGATG TCGGTGCTGG CGCAGCGCTA TGAACGCAAA CTGCACCGGA GCTAG
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Protein sequence | MLGLTIQQIA YIFQGAGWTI ILSLLGFVGG TVLGLPIALA RSSNSKALRV ASSLLVQFIQ GVPLPVIMFV VYFGISIGGF EVPALVAAGL AMTLYSGAYL GEIWKGCIQA VPKTQWEAAE CLALTPAQRF VYVVLPQALR IAIPPTVGFM VQIVKNTSYA VVINFFDLTY SAKVINNSTF MPFTVFTLAA AIYFAICFPM SVLAQRYERK LHRS
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