Gene Pden_4669 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4669 
Symbol 
ID4583172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp161088 
End bp161732 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content62% 
IMG OID639771973 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_918426 
Protein GI119387392 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.287398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGGAC TTACCATCCA ACAGATCGCC TATATCTTTC AGGGTGCAGG CTGGACCATC 
ATCCTGTCGC TTCTGGGTTT CGTCGGCGGC ACCGTGCTGG GCCTGCCGAT CGCGCTGGCC
CGATCCTCGA ACAGCAAGGC CCTGCGGGTC GCCTCGTCGC TTCTGGTGCA GTTCATCCAG
GGCGTGCCGC TGCCGGTGAT CATGTTCGTC GTCTATTTCG GCATCAGCAT CGGCGGCTTC
GAGGTTCCGG CGCTGGTCGC GGCCGGCCTG GCCATGACGC TTTATTCCGG CGCCTATCTG
GGTGAGATCT GGAAAGGCTG CATCCAGGCC GTGCCGAAGA CCCAGTGGGA GGCCGCCGAG
TGCCTGGCCC TGACCCCTGC GCAGCGCTTC GTCTACGTCG TCCTGCCGCA AGCGCTGCGC
ATCGCCATCC CGCCGACGGT GGGGTTCATG GTGCAGATCG TCAAGAACAC CTCTTACGCG
GTGGTCATCA ACTTCTTCGA CCTGACCTAT TCGGCCAAGG TCATCAACAA CTCGACCTTC
ATGCCCTTTA CGGTCTTCAC CCTCGCTGCC GCGATCTACT TTGCCATCTG CTTCCCGATG
TCGGTGCTGG CGCAGCGCTA TGAACGCAAA CTGCACCGGA GCTAG
 
Protein sequence
MLGLTIQQIA YIFQGAGWTI ILSLLGFVGG TVLGLPIALA RSSNSKALRV ASSLLVQFIQ 
GVPLPVIMFV VYFGISIGGF EVPALVAAGL AMTLYSGAYL GEIWKGCIQA VPKTQWEAAE
CLALTPAQRF VYVVLPQALR IAIPPTVGFM VQIVKNTSYA VVINFFDLTY SAKVINNSTF
MPFTVFTLAA AIYFAICFPM SVLAQRYERK LHRS